Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3808	PP_3810	PP_3811	PP_3812	PP_5632
phage	PUT 8 MOI 1	-5.0	-0.2	+0.0	-0.1	-0.5
carbon source	D-Glucose (C)	-4.6	-0.5	+0.4	-0.3	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-2.3	-2.7	-0.1	+0.2	-0.2
nitrogen source	2,6-diaminopimelic (N)	-2.0	-1.2	-0.5	-0.3	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	-4.6	+0.2	+0.0	+0.2	-0.3
carbon source	Valeric (C)	-4.1	+0.7	-0.3	+0.1	-0.3
pH	pH 9	-3.2	+0.0	-0.3	-0.2	-0.1
stress	Growth with Chloride 500 mM; with MOPS	-1.9	-1.7	-0.0	+0.0	-0.0
pH	pH 6	-2.8	-0.1	+0.1	-0.1	-0.6
pH	Growth at pH9 and (C) Trisodium citrate	-2.6	-0.7	+0.1	-0.1	-0.0
pH	pH 4	-3.1	-0.1	+0.0	-0.0	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-2.1	-0.4	+0.0	-0.5	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	-1.6	-0.0	-0.5	-0.7
carbon source	ferulate (C); with MOPS	-1.7	-0.7	-0.2	-0.0	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5	-2.8	-0.2	-0.2	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-1.0	-1.2	-0.2	-0.1	-0.3
nitrogen source	Imidazole (N)	-2.2	-0.4	-0.1	-0.2	+0.2
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.7	-3.0	-0.3	-0.1	-0.0
carbon source	acetate (C)	-1.4	-1.2	+0.0	-0.1	+0.1
phage	P. put South MOI 10	-1.7	-0.3	-0.3	+0.2	-0.2
carbon source	D-Glucose (C)	-2.0	+0.7	-0.1	+0.2	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	+0.5	-0.6	-1.4	-0.3
carbon source	Myristic (C)	+1.0	-2.1	-0.1	+0.1	+0.5
pH	Valerolactone (C) pH 6.5	-0.5	-0.6	-0.5	-0.5	+1.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	+1.7	-0.0	+0.2	-0.0
phage	P. putida Sci small MOI 0.1	+1.9	-0.9	-0.2	-0.2	-0.0
carbon source	Valerolactone (C)	+0.2	-0.9	-0.5	+0.0	+1.9
nitrogen source	nitrogen source nitrite 1mM	+1.3	+0.7	+0.1	-0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+2.3	+0.1	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+7.4	-0.0	-0.1	-0.6