Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3802	PP_3803	PP_3804	PP_3805	PP_3806
nitrogen source	D-2-Aminobutyric (N)	-0.6	-0.2	+0.1	-0.7	-3.8
carbon source	3-Hydroxyhexanoic (C)	-0.0	+0.4	-0.1	-0.0	-4.7
pH	Growth at pH7 and (C) D-Glucose	-1.0	-1.0	-2.2	+0.1	-0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5	-0.5	-1.7	-0.2	-0.6
pH	pH 9	-1.2	-1.1	-1.1	+0.1	-0.2
carbon source	D-Glucose (C)	+0.0	+0.6	-1.5	+0.2	-2.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.5	-1.0	-0.6	+0.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-1.2	-0.6	-0.0	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.7	-0.9	+0.3	-0.6
pH	Valerolactone (C) pH 6.5	-0.2	-0.9	-0.1	+0.3	-2.0
phage	P. putida PUT 7 MOI 1	-1.1	-0.1	-0.7	-0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-1.0	+0.2	+0.1	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.3	-0.2	-0.0	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-0.8	-0.9	+0.1	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.5	-0.4	-0.7	-0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8	-0.9	-0.9	+0.1	-0.1
carbon source	3-Hydroxyhexanoic (C)	+0.2	+0.4	-0.1	-0.0	-3.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	-0.9	-1.1	+0.1	+0.5
carbon source	acetate (C)	-0.5	+0.4	-1.1	+0.0	-1.0
pH	D-Glucose (C) pH 7	+0.3	-0.8	+0.2	+0.1	-2.0
phage	P. putida Sci small MOI 0.1	-0.7	+0.3	-0.1	-0.6	-1.1
phage	P. putida Missley MOI 0.1	-0.6	+0.3	-0.8	-0.1	-0.9
pH	Growth at pH8 and (C) D-Glucose	+0.1	-0.1	+0.3	-0.5	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-1.1	-0.6	+0.1	+0.4
nitrogen source	Propiolactam (N)	+0.6	+0.1	+0.1	-0.1	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	-0.9	-0.2	+0.5	+0.1
nitrogen source	nitrogen source nitrate 5mM	-0.7	+0.7	-0.6	+0.1	-0.6
nitrogen source	D-2-Aminobutyric (N)	+0.8	-0.3	+0.6	+0.2	-2.4
carbon source	ferulate (C); with MOPS	+0.7	-0.1	+0.2	-0.4	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.8	-0.0	-0.4	+1.1