Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3777 and PP_3778 are separated by 17 nucleotidesPP_3778 and PP_3779 are separated by 201 nucleotidesPP_3779 and PP_3780 are separated by 91 nucleotidesPP_3780 and PP_3781 are separated by 347 nucleotides PP_3777: PP_3777 - conserved protein of unknown function, at 4,305,215 to 4,306,054 _3777 PP_3778: PP_3778 - Pyrroline-5-carboxylate reductase, at 4,306,072 to 4,306,866 _3778 PP_3779: PP_3779 - Transcriptional regulator, LysR family, at 4,307,068 to 4,308,000 _3779 PP_3780: PP_3780 - conserved protein of unknown function, at 4,308,092 to 4,308,247 _3780 PP_3781: PP_3781 - Oxygen-independent Coproporphyrinogen III oxidase family protein, at 4,308,595 to 4,310,010 _3781
Group Condition PP_3777 PP_3778 PP_3779 PP_3780 PP_3781
carbon source 1,3-Butandiol (C) -0.9 -0.3 -0.7 N.D. -0.2
carbon source Oleic (C) -0.3 -0.3 -0.8 N.D. -0.2
nitrogen source L-Ornithine (N) -0.7 -0.2 -0.5 N.D. +0.2
nitrogen source L-Ornithine (N) -0.4 -0.2 -0.5 N.D. +0.2
carbon source ferulate (C); with MOPS +0.0 -0.6 +0.2 N.D. -0.5
carbon source ferulate (C); with MOPS +0.3 -0.0 -0.9 N.D. +0.2
carbon source Myristic (C) -0.2 +0.3 -0.3 N.D. +0.3
carbon source carbon source Bisabolene 48.9 mM +0.4 +0.4 -0.3 N.D. -0.2
carbon source D-Glucose (C) +0.3 +0.3 -0.4 N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.1 +0.7 +0.2 N.D. -0.3
carbon source ferulate (C); with MOPS +0.2 +0.7 -0.2 N.D. +0.2
pH Growth at pH6 and (C) D-Glucose +0.3 +0.6 +0.3 N.D. -0.4
phage P. putida Sci small MOI 0.1 +0.3 -0.1 +0.5 N.D. +0.3
pH pH 8 +0.3 -0.1 +0.4 N.D. +0.5
nitrogen source Glycine (N) +0.5 +0.4 +0.3 N.D. +0.0
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.1 +0.7 +0.5 N.D. -0.1
pH pH 6 +0.4 +0.1 +0.1 N.D. +0.6
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.6 +0.5 +0.0 N.D. +0.1
carbon source carbon source 3-O-methyl-glucose 50 mM +0.4 +0.3 +0.3 N.D. +0.3
carbon source carbon source 2-Deoxy-D-glucose 10 mM +0.6 +0.2 +0.2 N.D. +0.4
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.4 +0.3 +0.3 N.D. +0.4
carbon source carbon source 4-vinylphenol 0.01 mM +0.7 +0.3 +0.5 N.D. +0.0
nitrogen source Glycine (N) +0.5 +0.6 +0.3 N.D. +0.1
pH pH 9 +0.3 +0.5 +0.2 N.D. +0.5
carbon source carbon source 3-O-methyl-glucose 10 mM +0.7 +0.5 +0.5 N.D. +0.2
nitrogen source Hippuric (N) +0.7 +0.8 +0.4 N.D. +0.0
carbon source L-Glutamine (C) +0.4 +0.7 +0.6 N.D. +0.3
nitrogen source Hippuric (N) +0.7 +0.6 +0.5 N.D. +0.2
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.8 +0.5 +0.3 N.D. +0.5
pH pH 7 +0.5 +0.5 +0.7 N.D. +0.4
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