Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3776 and PP_3777 are separated by 5 nucleotidesPP_3777 and PP_3778 are separated by 17 nucleotidesPP_3778 and PP_3779 are separated by 201 nucleotidesPP_3779 and PP_3780 are separated by 91 nucleotides PP_3776: PP_3776 - putative permease (RarD protein), at 4,304,295 to 4,305,209 _3776 PP_3777: PP_3777 - conserved protein of unknown function, at 4,305,215 to 4,306,054 _3777 PP_3778: PP_3778 - Pyrroline-5-carboxylate reductase, at 4,306,072 to 4,306,866 _3778 PP_3779: PP_3779 - Transcriptional regulator, LysR family, at 4,307,068 to 4,308,000 _3779 PP_3780: PP_3780 - conserved protein of unknown function, at 4,308,092 to 4,308,247 _3780
Group Condition PP_3776 PP_3777 PP_3778 PP_3779 PP_3780
carbon source 1,3-Butandiol (C) -1.6 -0.9 -0.3 -0.7 N.D.
nitrogen source L-Ornithine (N) -1.7 -0.7 -0.2 -0.5 N.D.
carbon source 1,3-Butandiol (C) -1.6 -0.3 -0.5 -0.3 N.D.
nitrogen source L-Ornithine (N) -1.5 -0.4 -0.2 -0.5 N.D.
carbon source Oleic (C) -1.2 -0.3 -0.3 -0.8 N.D.
nitrogen source Valerolactam (N) -1.4 -0.5 -0.3 -0.3 N.D.
nitrogen source Valerolactam (N) -1.2 -0.5 -0.2 -0.3 N.D.
carbon source carbon source D-Glucose 55.5 mM -1.5 -0.1 +0.2 -0.6 N.D.
carbon source Oleic (C) -1.1 -0.3 -0.2 -0.4 N.D.
carbon source 1,3-Butandiol (C) -0.7 -0.4 -0.3 -0.3 N.D.
carbon source L-Isoleucine (C) -0.9 -0.3 -0.3 -0.0 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.8 -0.3 -0.3 +0.2 N.D.
carbon source ferulate (C); with MOPS -0.5 +0.3 -0.0 -0.9 N.D.
carbon source carbon source Bisabolene 48.9 mM -1.2 +0.4 +0.4 -0.3 N.D.
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -1.2 +0.0 +0.5 +0.3 N.D.
pH pH 9 -1.3 +0.3 +0.5 +0.2 N.D.
pH pH 6 -1.0 +0.4 +0.1 +0.1 N.D.
nitrogen source nitrite (N) -0.9 +0.0 +0.3 +0.3 N.D.
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.9 -0.1 +0.6 +0.2 N.D.
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.9 +0.6 +0.2 +0.2 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM -0.7 +0.4 +0.3 +0.3 N.D.
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.0 +0.1 +0.7 +0.5 N.D.
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.6 +0.5 +0.4 +0.1 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM -0.6 +0.7 +0.3 +0.5 N.D.
carbon source carbon source 3-O-methyl-glucose 10 mM -0.6 +0.7 +0.5 +0.5 N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM -0.3 +0.8 +0.5 +0.3 N.D.
carbon source L-Glutamine (C) -0.1 +0.4 +0.7 +0.6 N.D.
pH pH 7 -0.1 +0.5 +0.5 +0.7 N.D.
nitrogen source Hippuric (N) +0.1 +0.7 +0.8 +0.4 N.D.
nitrogen source Hippuric (N) +0.5 +0.7 +0.6 +0.5 N.D.
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