Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3763	PP_3764	PP_3765	PP_3766	PP_3767
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.3	-0.0	-0.7	-5.2	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.0	-0.0	+0.7	-6.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	-0.0	-0.7	-2.8	-0.0
carbon source	Myristic (C)	-0.5	-0.0	-0.2	-2.3	-0.0
carbon source	D-Glucose (C)	+0.4	-0.0	-1.4	-1.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	-0.1	-0.6	-1.3	+0.2
stress	Growth with Chloride 500 mM; with MOPS	-0.5	+0.2	+0.0	-2.2	-0.1
carbon source	Valerolactone (C)	-0.6	+0.1	-0.4	-0.9	-0.7
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4	+0.2	-2.2	-0.9	+0.1
carbon source	p-Coumaric (C)	+0.2	+0.0	+0.1	-2.5	+0.0
phage	P. putida Sci small MOI 0.1	-2.5	-0.0	+0.4	-0.4	+0.4
carbon source	ferulate (C); with MOPS	-1.3	+0.0	+0.3	-0.6	-0.5
pH	Valerolactone (C) pH 6.5	+0.3	-0.2	-0.3	-1.1	-0.8
carbon source	Tween 20 (C)	+0.0	-0.2	+0.5	-1.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.5	+0.2	+0.7	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.0	-1.1	-0.9	+0.5
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.4	+0.2	+0.3	-1.5	-0.8
carbon source	carbon source D-Glucose 55.5 mM	+0.2	+0.2	+0.4	-1.8	-0.1
phage	PUT8 MOI 0.1	+0.1	-0.1	+0.7	-1.5	-0.3
nitrogen source	Caprolactam (N)	+0.2	+0.1	+0.2	-1.8	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5	+0.2	-1.3	+0.5	+0.1
pH	pH 8	+0.5	+0.2	+0.6	-1.9	-0.1
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.4	+0.2	+0.6	-1.4	-0.3
pH	pH 5	+0.7	+0.2	+0.2	-1.2	-0.4
temperature	Growth at 30C; with MOPS	+0.5	-0.4	-0.3	+0.8	-0.9
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.4	-0.2	+1.0	-0.8	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	+0.3	-0.7	-0.3	-0.7
carbon source	ferulate (C); with MOPS	+0.1	+0.3	+1.3	-1.4	+0.3
nitrogen source	Urea (N)	-0.7	-0.1	+1.0	+1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.3	-0.4	+1.3	+1.0