Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3757	PP_3758	PP_3759	PP_3760	PP_3761
phage	P. putida PUT 7 MOI 1	-1.1	-1.0	-0.2	-0.1	-0.3
micoeukaryotes	C.elegans, mixed culture-2	-0.4	-0.1	-0.9	-0.6	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.8	-0.6	-0.8	-0.5	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3	+0.0	-0.8	-1.4	+0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.5	-0.4	-1.1	-0.3	-0.5
carbon source	D-Glucose (C)	-1.3	-0.5	+0.1	-0.3	+0.6
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-1.2	+0.7	-0.4	+0.2	-0.6
carbon source	ferulate (C); with MOPS	-0.3	-1.1	-0.5	+0.5	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6	-0.1	-0.7	-0.6	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.1	-0.2	-0.7	-0.7	+0.8
nitrogen source	L-Leucine (N)	-0.3	-0.2	-0.3	-1.4	+1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.1	-0.7	-0.6	-0.1	-0.4
nitrogen source	Propiolactam (N)	-0.4	-0.2	-0.8	-0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.4	-0.6	-0.3	-0.2
carbon source	1,3-Butandiol (C)	+1.1	-0.5	-0.8	+0.3	-0.4
temperature shift	Temperature shift 30_to_10; with MOPS	-1.2	+0.4	+0.2	+0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.2	-1.1	+1.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.3	-0.6	+0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.3	-0.8	+0.8	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+1.0	-0.3	-0.8	+0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.3	+0.2	-0.8	-0.1	-0.2
nitrogen source	DL-2-Aminobutyric (N)	-0.7	+0.3	-0.0	-0.7	+1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.9	-0.6	+2.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.4	-0.6	+0.9	-0.4
temperature shift	Temperature shift 10_to_30	-0.3	+0.3	+0.0	-0.4	+1.5
nitrogen source	DL-2-Aminobutyric (N)	-0.5	+0.4	+0.3	-0.4	+1.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.4	+0.4	+0.2	-0.4	+1.0
temperature shift	Temperature shift 10_to_30; with MOPS	+0.7	+0.1	+0.2	+0.2	+1.4
stress	3-methyl-1-butanol 0.4 vol%	-0.2	+0.6	+0.3	+1.0	+0.9
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.9	-0.0	+0.6	+0.5	+0.7