Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3738	PP_3739	PP_3740	PP_3741	PP_3742
phage	P. putida Missley MOI 0.1	-1.4	-0.7	-0.6	-0.3	+0.0
pH	Growth at pH6 and (C) D-Glucose	-1.4	-0.4	-0.6	-0.2	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-2.1	-0.1	-0.0	-0.1	-0.2
carbon source	1,3-Butandiol (C)	-2.2	+0.1	-0.3	+0.1	-0.0
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-1.6	-0.0	-0.1	-0.1	-0.3
nitrogen source	nitrite (N)	-1.5	-0.5	-0.1	+0.1	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-1.4	-0.2	-0.3	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.3	-0.6	-0.2	-0.2
nitrogen source	nitrate (N)	-1.4	-0.2	-0.2	-0.0	-0.1
carbon source	D-Glucose (C)	-1.4	+0.0	+0.0	-0.1	-0.4
nitrogen source	2,6-diaminopimelic (N)	+0.1	-0.1	-0.9	-0.1	-0.8
stress	Growth with Chloride 500 mM	-1.2	-0.2	-0.1	-0.2	+0.2
phage	P. putida PUT 7 MOI 1	-0.3	-0.8	-0.4	-0.4	+0.4
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.9	+0.2	-0.4	+0.3	+0.1
nitrogen source	NAG (N); with MOPS	-1.1	+0.2	-0.0	-0.3	+0.5
carbon source	Acetate Carbon Source (5mM)	-1.3	+0.0	+0.3	+0.1	+0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-1.1	+0.3	-0.1	+0.1	+0.3
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.7	+0.2	-0.4	+0.0	+0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.7	+0.1	-0.4	+0.2	+0.6
pH	Growth at pH7 and (C) D-Glucose	-0.9	+0.2	+0.4	+0.0	+0.4
phage	P. putida Sci Big MOI 0.1	+0.9	-0.6	+0.3	-0.2	+0.1
pH	D-Glucose (C) pH 6	+0.4	-0.1	-0.4	-0.1	+0.8
stress	Growth with Chloride 200 mM; with MOPS	+0.9	-0.2	-0.5	+0.0	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.1	-0.1	-0.3	-0.2	+0.4
carbon source	Vanillic Acid (C)	-0.4	+1.3	+0.9	+0.1	-0.2
carbon source	Vanillin (C)	+0.1	+0.8	+0.8	+0.1	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.8	-0.2	+0.4	-0.0	-0.0
carbon source	Vanillin (C)	+0.3	+1.0	+0.6	+0.2	+0.0
carbon source	Vanillic Acid (C)	+0.4	+1.2	+0.9	+0.3	+0.1
carbon source	Vanillic Acid (C)	+0.3	+1.4	+0.8	+0.3	+0.2