Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3720	PP_3721	PP_3722	PP_3723	PP_3724
carbon source	L-Arginine (C)	-0.1	-1.2	-1.0	-0.9	-0.7
phage	P. putida Sci Big MOI 0.1	-0.8	-0.4	-1.1	-1.0	-0.5
phage	P. putida Missley MOI 0.1	-0.4	-0.7	-0.8	-0.4	-0.6
phage	P. putida PUT 7 MOI 1	+0.1	-0.5	-0.1	-1.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	-0.1	-0.5	-0.4	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.3	+0.0	-0.1	-1.2	-0.2
phage	P. putida Sci small MOI 0.1	-0.5	-0.6	-0.2	-0.1	-0.2
nitrogen source	Propandiamine (N)	-0.3	+0.1	-0.3	-0.6	-0.4
carbon source	ferulate (C); with MOPS	-0.2	-0.6	+0.1	+0.1	-0.9
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.4	-0.2	-0.3	-0.3	-0.3
nitrogen source	nitrogen source nitrite 1mM	-0.3	+0.0	-0.5	-0.4	-0.2
stress	R2A with Fusaric 240 ug/mL	-0.6	-0.2	-0.2	+0.1	-0.5
phage	PUT 8 MOI 1	-0.5	-0.2	+0.3	-0.6	-0.3
no stress control	Growth with no stress	-0.2	-0.4	+0.2	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.0	-0.1	-0.9	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.2	-0.4	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.3	-0.4	-0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.4	+0.3	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.5	+0.2	-0.3	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	+0.2	-0.1	-0.2	+0.6
temperature shift	Temperature shift 30_to_21; with MOPS	-0.2	+0.1	+0.5	+0.3	-0.6
pH	pH 5	-0.1	+0.3	+0.3	-0.5	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5	-0.2	+0.4	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.1	-0.1	+0.4	+0.7
nitrogen source	Urea (N); with MOPS	+0.4	+0.4	-0.1	+0.5	-0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.2	-1.0	+1.1	+0.7	+0.6
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.4	-0.9	+0.9	+1.1	+0.7
micoeukaryotes	C.elegans, mixed culture-1	-0.3	-1.0	+1.1	+1.1	+0.5
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.3	-0.7	+1.0	+0.9	+0.6
micoeukaryotes	C.elegans, mixed culture-2	-0.3	-0.9	+1.4	+1.2	+0.5