Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3719	PP_3720	PP_3721	PP_3722	PP_3723
phage	P. putida Sci Big MOI 0.1	-0.2	-0.8	-0.4	-1.1	-1.0
carbon source	L-Arginine (C)	-0.0	-0.1	-1.2	-1.0	-0.9
phage	P. putida Missley MOI 0.1	-0.4	-0.4	-0.7	-0.8	-0.4
phage	P. putida PUT 7 MOI 1	-0.3	+0.1	-0.5	-0.1	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5	-0.6	-0.1	-0.5	-0.4
phage	P. putida Sci small MOI 0.1	-0.3	-0.5	-0.6	-0.2	-0.1
nitrogen source	2,6-diaminopimelic (N)	+0.1	-0.3	+0.0	-0.1	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5	-0.2	+0.1	-0.4	-0.2
nitrogen source	Propandiamine (N)	+0.4	-0.3	+0.1	-0.3	-0.6
phage	PUT 8 MOI 1	+0.2	-0.5	-0.2	+0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.2	-0.5	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.0	-0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.6	-0.3	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.2	+0.0	+0.5	-0.4
carbon source	ferulate (C); with MOPS	+0.3	-0.2	-0.6	+0.1	+0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.2	-0.5	-0.2	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.2	-0.4	+0.3	-0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.3	-0.5	+0.4	+0.2	-0.2
carbon source	Valeric (C)	+0.4	-0.4	-0.0	+0.4	-0.2
temperature shift	Temperature shift 10_to_30; with MOPS	+0.2	+0.1	-0.3	+0.6	-0.2
pH	pH 5	+0.5	-0.1	+0.3	+0.3	-0.5
carbon source	carbon source Bisabolol 45 mM	+0.3	+0.3	+0.5	-0.3	-0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.1	-0.2	-1.0	+1.1	+0.7
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.2	-0.4	-0.9	+0.9	+1.1
nitrogen source	nitrate (N)	+0.3	-0.3	+0.1	+0.7	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.2	+0.4	-0.1	+0.5
micoeukaryotes	C.elegans, mixed culture-1	+0.2	-0.3	-1.0	+1.1	+1.1
micoeukaryotes	Dictyostellum sp.mixed culture-1	+0.2	-0.3	-0.7	+1.0	+0.9
nitrogen source	Urea (N); with MOPS	+0.2	+0.4	+0.4	-0.1	+0.5
micoeukaryotes	C.elegans, mixed culture-2	+0.1	-0.3	-0.9	+1.4	+1.2