Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3697	PP_5622	PP_3698	PP_3699	PP_3700
carbon source	carbon source D-Glucose 55.5 mM	-0.2	-0.3	-0.0	-0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.0	-0.1	-0.2	-0.4	-0.4
carbon source	D-Glucose (C)	-0.1	+0.1	-0.5	-0.5	-0.0
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.2	-0.1	-0.1	+0.2	-0.4
nitrogen source	NAG (N); with MOPS	+0.2	-0.1	-0.4	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.2	-0.4	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.0	+0.4	+0.1	-0.4
temperature shift	Temperature shift 10_to_30	-0.1	+0.0	+0.1	-0.3	+0.4
nitrogen source	NAG (N); with MOPS	-0.4	+0.2	+0.4	-0.1	+0.2
nitrogen source	D-2-Aminobutyric (N)	-0.1	+0.1	+0.1	-0.3	+0.6
phage	PUT 8 MOI 1	-0.1	+0.3	+0.1	-0.2	+0.4
nitrogen source	Propiolactam (N)	-0.2	+0.0	+0.1	+0.2	+0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.1	+0.1	+0.1	+0.4	+0.3
phage	P. putida Sci Big MOI 0.1	+0.0	+0.2	+0.3	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.2	+0.5	+0.1	-0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	+0.4	+0.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3	+0.0	+0.1	-0.0	+0.5
carbon source	Valerolactone (C)	+0.3	+0.2	+0.0	+0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.1	+0.2	+0.3	+0.4
phage	PUT8 MOI 10	+0.0	+0.3	+0.1	+0.3	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.2	+0.3	+0.6	-0.2
carbon source	DL-2-Aminoadipic 10 mM (C)	+0.2	+0.3	+0.2	+0.1	+0.4
stress	R2A with Fusaric 240 ug/mL	+0.0	+0.3	+0.4	+0.2	+0.3
phage	P. putida Sci small MOI 0.1	+0.4	+0.3	+0.2	+0.5	+0.0
phage	P. putida compost MOI 0.1	+0.2	+0.2	+0.4	+0.3	+0.2
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	+0.4	+0.2	+0.2	+0.2	+0.2
nitrogen source	2,6-diaminopimelic (N)	+0.3	+0.6	+0.1	+0.3	+0.2
phage	P. putida Sci small MOI 0.1	+0.4	+0.1	+0.3	+0.3	+0.5
phage	P. putida PUT 7 MOI 1	+0.6	+0.6	+0.6	+0.5	+0.3
phage	P. putida Missley MOI 0.1	+0.6	+0.4	+0.6	+0.7	+0.6