Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3651	PP_3652	PP_3653	PP_3654	PP_3655
nitrogen source	D-2-Aminobutyric (N)	-0.4	-1.0	-4.9	-5.7	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.7	-4.3	-5.0	+0.4
nitrogen source	DL-2-Aminobutyric (N)	+0.1	-0.1	-2.8	-4.2	+0.1
nitrogen source	DL-2-Aminobutyric (N)	+0.0	-0.3	-2.1	-3.8	+0.2
temperature shift	Temperature shift 30_to_10; with MOPS	-0.6	-0.2	-0.7	-0.8	-0.1
carbon source	D-Glucose (C)	+0.1	-0.0	-1.0	-0.7	-0.1
carbon source	L-Leucine (C)	+0.0	-0.1	-0.3	-1.3	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-0.2	-0.9	-0.9	+0.3
temperature shift	Temperature shift 30_to_10; with MOPS	-0.6	-0.1	-0.2	-0.6	+0.0
temperature shift	Temperature shift 30_to_4	-0.8	-0.4	-0.1	-0.5	+0.2
pH	Growth at pH6 and (C) D-Glucose	-0.2	-0.3	+0.1	-1.1	-0.0
carbon source	Trisodium citrate (C)	+0.2	-0.6	-0.1	-0.8	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.0	+0.2	-0.4	-1.0	-0.4
temperature	Growth at 25C	-0.1	-0.1	+0.1	-0.9	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	+0.2	-0.3	-0.6	-0.3
pH	Growth at pH9 and (C) Trisodium citrate	+0.2	-0.6	-0.8	+0.2	-0.2
pH	Growth at pH9 and (C) Trisodium citrate	+0.1	-0.5	-0.5	+0.3	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.3	-0.4	+0.4	-0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	-0.4	+0.6	-0.5	-0.0
carbon source	ferulate (C); with MOPS	+0.8	-0.6	-0.4	-0.3	-0.2
carbon source	ferulate (C); with MOPS	+0.4	-0.4	-0.5	-0.2	+0.1
pH	Growth at pH7 and (C) Trisodium citrate	+0.4	-0.6	-0.5	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.3	+0.3	-0.7	-0.2
phage	P. putida Missley MOI 0.1	-0.2	-0.7	+0.2	+0.4	+0.1
stress	Growth with Chloride 500 mM; with MOPS	+0.2	-0.3	-0.9	+0.5	+0.3
phage	P. putida Sci small MOI 0.1	-0.0	-0.3	+0.6	-0.7	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.0	-0.4	-0.3	+0.8	-0.1
carbon source	Valerolactone (C)	+0.9	-0.2	-0.2	+0.4	+0.2
nitrogen source	L-Methionine (N)	-0.1	-0.0	+5.8	+5.7	+0.0
nitrogen source	L-Methionine (N)	-0.2	+0.0	+6.2	+6.1	+0.0