Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3601 and PP_3602 are separated by 58 nucleotidesPP_3602 and PP_3603 are separated by 134 nucleotidesPP_3603 and PP_5607 are separated by 185 nucleotidesPP_5607 and PP_5608 are separated by 74 nucleotides PP_3601: PP_3601 - galactarate dehydratase, at 4,091,392 to 4,092,945 _3601 PP_3602: PP_3602 - 2,5-dioxovalerate dehydrogenase, at 4,093,004 to 4,094,584 _3602 PP_3603: PP_3603 - Transcriptional regulator, GntR family, at 4,094,719 to 4,095,483 _3603 PP_5607: PP_5607 - conserved membrane protein of unknown function, at 4,095,669 to 4,096,319 _5607 PP_5608: PP_5608 - putative exported protein, at 4,096,394 to 4,096,723 _5608
Group Condition PP_3601 PP_3602 PP_3603 PP_5607 PP_5608
carbon source D-Galacturonic Acid (C) -6.2 -1.1 +0.8 +0.1 +0.2
carbon source D-Galacturonic Acid (C) -5.9 -0.9 +0.8 -0.0 -0.1
carbon source Mucic (C) -5.1 -1.3 +1.4 +0.0 +0.1
carbon source Mucic (C) -4.9 -1.2 +1.3 +0.3 -0.1
carbon source ferulate (C); with MOPS +0.2 +0.1 -3.8 +0.1 -0.1
carbon source L-Lysine 10 mM (C) +0.0 -0.2 -3.1 -0.5 +0.4
carbon source L-Lysine (C) +0.1 -0.2 -2.9 +0.1 -0.2
carbon source D-Glucaric (C) -0.4 -0.8 -1.7 +0.2 -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.2 -3.3 -0.2 +0.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.1 -0.0 -2.7 -0.1 -0.3
carbon source DL-3-Hydroxybutyric (C) -0.2 +0.1 -2.6 +0.0 -0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.2 -0.0 -2.2 +0.0 -0.5
carbon source L-Lysine (C) +0.4 +0.1 -2.8 +0.2 -0.7
carbon source DL-3-Hydroxybutyric (C) -0.0 -0.2 -2.5 +0.1 +0.0
carbon source Hexanoic (C) -0.0 +0.1 -2.4 -0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.0 -1.6 -0.5 -0.6
carbon source L-Alanine (C) +0.1 +0.1 -2.9 +0.2 +0.1
carbon source D-Glucaric (C) -0.7 -0.8 -0.8 +0.3 -0.3
carbon source 1,4-Butanediol (C) +0.3 -0.0 -2.4 -0.1 -0.1
phage P. putida Sci small MOI 0.1 -0.5 -0.1 -1.4 +0.3 -0.6
carbon source Delta-Undecalactone (C) -0.1 +0.1 -2.2 -0.2 +0.2
carbon source Rhamnogalacturonan - from potato (C) -2.0 -0.4 +0.2 -0.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 +0.0 -2.4 +0.2 +0.2
carbon source ferulate (C); with MOPS -0.1 +0.4 -2.2 -0.4 +0.3
carbon source D-Glucuronic gamma lactone (C) -0.8 -0.9 +1.0 +0.1 -0.0
carbon source D-Glucuronic gamma lactone (C) -0.9 -1.0 +0.9 +0.3 +0.0
carbon source 4-Hydroxyvalerate (C) (40mM) -0.4 -0.1 +2.0 -0.2 -0.1
carbon source 5-Aminovaleric 10 mM (C) +0.3 +0.1 +2.4 -0.1 -0.3
carbon source 5-Aminovaleric 10 mM (C) +0.2 -0.3 +2.8 -0.1 +0.5
carbon source Valerolactam 10 mM (C) +0.1 +0.3 +3.4 +0.0 -0.4
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