Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3595 and PP_3596 are separated by 16 nucleotidesPP_3596 and PP_3597 are separated by 22 nucleotidesPP_3597 and PP_3598 are separated by 425 nucleotidesPP_3598 and PP_3599 are separated by 347 nucleotides PP_3595: PP_3595 - L-lysine and D-lysine ABC transporter, permease component 2 (from data), at 4,084,575 to 4,085,285 _3595 PP_3596: PP_3596 - D-lysine oxidase, at 4,085,302 to 4,086,546 _3596 PP_3597: PP_3597 - L-lysine and D-lysine ABC transporter, ATPase component (from data), at 4,086,569 to 4,087,351 _3597 PP_3598: PP_3598 - gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data), at 4,087,777 to 4,088,586 _3598 PP_3599: PP_3599 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data), at 4,088,934 to 4,089,845 _3599
Group Condition PP_3595 PP_3596 PP_3597 PP_3598 PP_3599
carbon source L-Lysine (C) -6.2 -6.5 -5.8 -0.2 -0.1
carbon source L-Lysine (C) -3.7 -5.3 -6.5 -0.1 -0.1
nitrogen source D-Lysine (N) -5.0 -5.9 -3.6 +0.1 +0.2
carbon source L-Lysine (C) -3.6 -5.6 -3.9 -0.2 +0.0
carbon source L-Lysine 10 mM (C) -3.5 -3.0 -6.6 -0.1 -0.0
nitrogen source D-Lysine (N) -4.7 -5.4 -2.7 -0.1 +0.2
carbon source D-Lysine 10 mM (C) -5.0 -3.9 -3.4 +0.0 -0.2
carbon source D-Lysine 10 mM (C) -4.0 -3.7 -4.3 -0.2 +0.1
carbon source Mucic (C) -0.1 -0.4 +0.0 -0.0 -6.0
nitrogen source L-Lysine (N) -2.1 -2.4 -1.6 -0.2 +0.1
carbon source D-Galacturonic Acid (C) -0.1 +0.2 -0.1 +0.1 -6.2
nitrogen source L-Lysine (N) -2.3 -2.5 -1.5 -0.1 +0.2
carbon source D-Glucuronic gamma lactone (C) +0.1 -0.1 -0.2 -0.0 -5.8
carbon source D-Galacturonic Acid (C) +0.2 -0.2 +0.1 -0.0 -6.1
carbon source Mucic (C) -0.1 -0.0 +0.1 -0.2 -5.3
carbon source D-Glucaric (C) -0.2 -0.0 -0.1 +0.1 -5.3
carbon source D-Glucuronic gamma lactone (C) +0.2 -0.2 +0.2 +0.2 -5.5
carbon source D-Glucaric (C) -0.0 -0.1 +0.1 +0.1 -5.1
nitrogen source Putrescine (N) +0.1 -0.0 -0.5 -3.5 -0.2
nitrogen source Putrescine (N) -0.1 +0.2 +0.2 -4.0 -0.0
carbon source D-Glucuronic Acid (C) -0.1 -0.1 -0.1 +0.1 -3.5
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.5 -1.0 -1.3 -0.3 -0.2
phage P. putida PUT 7 MOI 1 -0.1 -0.4 -0.6 -1.0 -0.8
nitrogen source Putrescine (N) +0.1 -0.2 -0.5 -2.1 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.3 -1.7 -0.7 -0.1 +0.2
nitrogen source D-2-Aminobutyric (N) +0.0 -2.6 -0.1 +0.2 +0.0
nitrogen source D-2-Aminobutyric (N) +0.2 -2.5 -0.3 +0.3 -0.0
carbon source Rhamnogalacturonan - from potato (C) -0.2 -0.3 +0.6 -0.0 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -1.8 +0.4 +0.3 +0.4
pH Growth at pH8 and (C) D-Glucose -0.3 -1.5 +0.4 +0.4 -0.2
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