Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3564 and PP_3565 are separated by 104 nucleotidesPP_3565 and PP_3566 are separated by 48 nucleotidesPP_3566 and PP_3567 are separated by 106 nucleotidesPP_3567 and PP_3568 are separated by 117 nucleotides PP_3564: PP_3564 - Transcriptional regulator, AraC family, at 4,042,766 to 4,043,743 _3564 PP_3565: PP_3565 - Transporter, LysE family, at 4,043,848 to 4,044,459 _3565 PP_3566: PP_3566 - Major facilitator family transporter, at 4,044,508 to 4,045,707 _3566 PP_3567: PP_3567 - Transcriptional regulator, LysR family, at 4,045,814 to 4,046,719 _3567 PP_3568: PP_3568 - conserved protein of unknown function, at 4,046,837 to 4,047,187 _3568
Group Condition PP_3564 PP_3565 PP_3566 PP_3567 PP_3568
nitrogen source nitrate (N) -1.2 -0.8 -0.4 -0.5 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.8 +0.0 +0.1 -0.1 N.D.
carbon source acetate (C) -0.7 -0.2 -0.2 -0.6 N.D.
carbon source ferulate (C); with MOPS -0.8 -0.4 -0.5 +0.2 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.6 -0.5 -0.1 -0.2 N.D.
phage P. putida PUT 7 MOI 1 +0.4 -0.6 -0.2 -0.8 N.D.
pH Growth at pH6 and (C) D-Glucose -1.0 -0.2 -0.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -0.1 -0.3 -0.2 N.D.
phage P. putida South MOI 10 +0.0 -0.4 -0.3 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.4 +0.2 -0.6 N.D.
pH Growth at pH7 and (C) D-Glucose -0.6 -0.4 +0.1 -0.1 N.D.
nitrogen source 2,6-diaminopimelic (N) -0.4 +0.3 -0.6 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 +0.3 -0.2 -0.4 N.D.
nitrogen source D-2-Aminobutyric (N) -0.8 -0.2 -0.0 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.1 +0.5 -0.3 N.D.
carbon source Valeric (C) +0.4 -0.6 -0.5 +0.1 N.D.
nitrogen source Propiolactam (N) +0.4 -0.7 -0.0 -0.2 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.6 -0.4 +0.1 +0.3 N.D.
nitrogen source Urea (N) +0.1 -0.7 -0.2 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.4 +0.4 -0.4 N.D.
phage P. putida Missley MOI 0.1 -0.1 -0.6 +0.2 +0.5 N.D.
nitrogen source Urea (N) -0.7 +0.1 +0.3 +0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 +0.7 +0.1 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.8 -0.3 +0.3 N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.8 -0.1 -0.0 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +0.4 -0.3 -0.2 N.D.
carbon source carbon source D-Glucose 55.5 mM +0.9 +0.2 -0.1 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.2 +0.3 +0.2 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM +0.6 +0.4 +0.1 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 -0.1 -0.2 +0.6 N.D.
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