Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3563	PP_3564	PP_3565	PP_3566	PP_3567
nitrogen source	nitrate (N)	-0.2	-1.2	-0.8	-0.4	-0.5
phage	P. putida Sci Big MOI 0.1	-1.4	-1.0	-0.0	-0.1	+0.1
carbon source	ferulate (C); with MOPS	-1.4	-0.2	+0.3	-0.1	-0.6
phage	P. putida PUT 7 MOI 1	-0.6	+0.4	-0.6	-0.2	-0.8
pH	Growth at pH9 and (C) Trisodium citrate	-0.5	-0.6	-0.5	-0.1	-0.2
phage	P. putida South MOI 10	-0.6	+0.0	-0.4	-0.3	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-1.8	+0.0	+0.1	-0.1
stress	Growth with Chloride 500 mM; with MOPS	-1.2	+0.2	-0.1	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.3	-0.4	+0.2	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.5	+0.3	-0.2	-0.4
carbon source	ferulate (C); with MOPS	+0.2	-0.8	-0.4	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.4	+0.4	-0.0	+0.0	-0.3
carbon source	acetate (C)	+0.5	-0.7	-0.2	-0.2	-0.6
nitrogen source	Urea (N)	-0.6	+0.1	-0.7	-0.2	+0.3
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-1.4	+0.3	-0.1	-0.2	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2	-0.3	+0.7	+0.1	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2	+0.0	+0.3	-0.2	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.1	-0.0	+0.4	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.2	-0.4	+0.4	-0.4
nitrogen source	Urea (N)	-0.8	-0.7	+0.1	+0.3	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.4	-0.4	+0.3	-0.6	-0.3
phage	P. putida Missley MOI 0.1	-0.5	-0.1	-0.6	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.3	+0.5	-0.0	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	+0.4	-0.6	-0.4	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	+0.8	-0.3	+0.3
carbon source	Valeric (C)	+0.7	+0.4	-0.6	-0.5	+0.1
nitrogen source	nitrogen source nitrite 0.5mM	+1.1	-0.7	-0.2	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	-0.8	-0.1	+0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.3	-0.1	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	+0.4	+0.2	-0.1	+0.2