Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3556	PP_3557	PP_3558	PP_3559	PP_3560
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.4	-0.1	-0.4	-0.8	-1.2
stress	R2A with Fusaric 240 ug/mL	-0.1	+0.1	-0.3	-1.7	-0.2
pH	Growth at pH6 and (C) D-Glucose	+0.0	-0.1	-0.0	-0.7	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4	+0.0	-0.5	-0.7	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-0.3	-0.3	-1.4	-0.3
toxin	pUC18_phdP1_pSU18T_docP1	+0.0	-0.4	-0.3	-1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.4	-0.1	-1.1	-0.1
nitrogen source	nitrogen source nitrate 5mM	+0.1	-0.4	+0.2	-1.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.3	+0.2	-0.6	-0.6
pH	Growth at pH7 and (C) D-Glucose	-0.2	-0.8	-0.3	+0.8	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.0	+0.3	+0.3	-1.1	-0.2
carbon source	D-Glucose (C)	+0.0	-0.1	+0.3	-1.5	+0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.1	-0.3	-0.4	+0.6	-0.4
carbon source	Myristic (C)	+0.3	+0.1	-0.1	-1.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	+0.3	+0.2	+0.5	-0.6
carbon source	Tween 20 (C)	+0.3	-0.9	+0.3	+0.5	-0.1
nitrogen source	2,6-diaminopimelic (N)	-0.4	-0.5	+0.3	+0.7	-0.0
stress	Growth with Chloride 500 mM; with MOPS	+0.1	-0.5	+0.2	+0.7	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.4	+0.6	-0.8	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.3	+0.1	+0.8	-0.9
nitrogen source	NAG (N); with MOPS	+0.1	-0.1	+0.4	+0.9	-0.8
phage	P. putida South MOI 10	-0.2	-0.3	-0.0	+0.9	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5	-0.2	+0.1	+1.3	+0.3
nitrogen source	nitrate (N)	-0.1	-0.3	+0.3	+0.6	+0.6
phage	P. putida Sci Big MOI 0.1	+0.1	-0.4	+0.4	+0.8	+0.2
nitrogen source	Urea (N); with MOPS	+0.1	+0.2	+0.7	+0.9	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.2	+0.3	+1.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.2	+0.0	+1.1	+0.9
phage	P. putida Missley MOI 0.1	+0.0	+0.2	+0.6	+1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.1	+0.2	+2.5	-0.4