Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3545	PP_3546	PP_3547	PP_3548	PP_3549
nitrogen source	NAG (N); with MOPS	-0.1	-0.3	+0.0	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.8	-0.2	-0.0	+0.2
phage	P. putida PUT 7 MOI 1	+0.2	-0.1	-0.2	+0.1	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	-0.3	+0.3	-0.1	-0.6
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.1	-0.2	-0.5	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	-0.5	-0.2	+0.4
carbon source	ferulate (C); with MOPS	-0.4	+0.3	-0.3	+0.2	-0.2
phage	P. putida Sci small MOI 0.1	+0.1	+0.1	+0.3	-0.1	-0.8
pH	Growth at pH6 and (C) D-Glucose	-0.1	-0.7	+0.4	+0.2	-0.1
nitrogen source	nitrogen source nitrite 1mM	+0.2	-0.4	-0.5	-0.1	+0.5
attachment on pdms	attachment on PDMS; 2 hours	-0.3	+0.4	-0.2	-0.2	+0.2
carbon source	Valeric (C)	-0.0	+0.6	-0.1	-0.1	-0.5
phage	P. putida Missley MOI 0.1	+0.1	+0.1	+0.4	+0.1	-0.8
carbon source	Ethyl decanoate (C)	+0.1	-0.3	-0.3	+0.1	+0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.0	-0.4	-0.2	-0.2	+0.7
temperature shift	Temperature shift 30_to_25; with MOPS	+0.1	+0.1	+0.2	+0.2	-0.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.3	+0.4	+0.1	-0.3	+0.2
carbon source	butyrate (C)	-0.1	+0.7	-0.1	+0.0	-0.3
carbon source	ferulate (C); with MOPS	+0.2	+0.5	-0.2	-0.1	-0.1
phage	P. putida Sci Big MOI 0.1	-0.1	-0.6	+0.5	-0.1	+0.6
pH	pH 8	+0.3	-0.4	-0.3	+0.2	+0.4
phage	P. putida South MOI 10	-0.1	+0.3	-0.4	+0.1	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.2	-0.3	-0.2	+0.2	+0.7
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.4	+0.1	+0.2	+0.5
carbon source	2-Methylbutanoic (C)	+0.2	+0.6	-0.3	-0.1	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.3	-0.3	-0.0	+0.2	+0.9
pH	Growth at pH7 and (C) D-Glucose	+0.2	+0.1	+0.5	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.1	+0.4	+0.3	-0.1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	+0.4	-0.0	+0.3	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3	+0.3	+0.2	+0.3	+0.1