Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3533	PP_3534	PP_3535	PP_3536	PP_3537
carbon source	p-Coumaric (C)	+0.0	-0.1	+0.1	-0.0	-4.8
carbon source	p-Coumaric (C)	-0.2	-0.0	+0.1	-0.0	-4.6
carbon source	p-Coumaric (C)	+0.0	-0.2	-0.1	-0.0	-3.5
carbon source	p-Coumaric (C)	+0.1	-0.1	-0.2	+0.1	-3.6
carbon source	4-Hydroxybenzoic Acid (C)	-0.1	+0.0	+0.0	+0.2	-3.6
carbon source	4-Hydroxybenzoic Acid (C)	+0.1	+0.1	-0.0	+0.0	-3.2
carbon source	p-Coumaric (C)	+0.0	+0.2	-0.2	+0.0	-2.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.4	-0.8	-0.3	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	-0.5	-0.1	-0.3	-0.4
carbon source	4-Hydroxybenzoic Acid (C)	+0.0	+0.1	+0.0	-0.1	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2	-0.4	+0.2	-0.4	-0.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.8	-0.1	-0.0	+0.3	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.6	-0.3	-0.3	-0.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4	-0.5	+0.3	-0.2	-0.1
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.2	-0.6	-0.0	+0.5	-0.3
pH	pH 7	-0.1	-0.7	-0.1	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	-0.3	+0.4	+0.3	-0.1
pH	Growth at pH8 and (C) D-Glucose	+0.3	-0.8	+0.2	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.5	-0.2	+0.7	+0.1
nitrogen source	NAG (N); with MOPS	-0.6	+0.3	+0.2	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.8	+0.1	-0.2	-0.4
pH	Growth at pH6 and (C) D-Glucose	+0.3	+0.5	+0.3	-0.1	-0.8
nitrogen source	D-2-Aminobutyric (N)	-0.4	+0.7	+0.2	+0.1	+0.1
carbon source	Valerolactone (C)	-0.1	+0.1	+0.1	-0.2	+1.0
nitrogen source	2,6-diaminopimelic (N)	+0.2	+0.5	-0.1	-0.4	+0.6
nitrogen source	Hydantoin (N)	+0.2	+0.8	+0.3	-0.1	+0.1
phage	P. putida Sci small MOI 0.1	+0.4	-0.1	+0.2	+0.2	+0.8
phage	P. putida Missley MOI 0.1	+0.3	+0.3	+0.1	+0.3	+0.4
phage	P. putida PUT 7 MOI 1	+0.7	-0.1	+0.3	+0.4	+0.2
nitrogen source	Propiolactam (N)	+0.2	+0.5	+0.3	+0.3	+0.2