Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3532	PP_3533	PP_3534	PP_3535	PP_3536
nitrogen source	NAG (N); with MOPS	-6.6	-0.6	+0.3	+0.2	-0.1
nitrogen source	2,6-diaminopimelic (N)	-4.1	-0.0	-0.3	-0.2	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	-3.4	+0.1	+0.1	+0.0	-0.2
carbon source	1,3-Butandiol (C)	-3.2	-0.2	+0.2	+0.0	+0.0
carbon source	Valeric (C)	-3.1	-0.1	-0.1	+0.2	+0.1
carbon source	Trisodium citrate (C)	-1.9	-0.0	-0.5	-0.5	+0.2
temperature shift	Temperature shift 10_to_25; with MOPS	-1.9	+0.0	-0.4	-0.1	-0.2
r2a control	R2A control	-2.0	+0.1	-0.2	-0.0	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-2.0	+0.0	-0.0	-0.0	-0.2
temperature shift	Temperature shift 10_to_21; with MOPS	-1.5	-0.1	-0.4	-0.2	-0.1
nitrogen source	Urea (N)	-2.2	-0.2	-0.1	+0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-1.6	-0.3	-0.2	-0.0	+0.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.5	-0.4	-0.8	-0.3	-0.1
temperature shift	Temperature shift 10_to_30; with MOPS	-2.3	-0.2	+0.1	+0.1	+0.2
carbon source	Rhamnogalacturonan - from potato (C)	-2.1	-0.0	-0.2	+0.2	+0.1
pH	Growth at pH8 and (C) D-Glucose	-1.6	+0.3	-0.8	+0.2	+0.1
nitrogen source	Urea (N); with MOPS	-2.9	+0.2	+0.4	+0.1	+0.2
carbon source	ferulate (C); with MOPS	-1.6	+0.1	-0.5	-0.2	+0.3
temperature shift	Temperature shift 10_to_30; with MOPS	-2.0	+0.0	-0.1	+0.1	+0.1
phage	PUT 8 MOI 1	-2.7	+0.2	-0.2	+0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	+0.3	+0.2	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	-0.1	-0.5	-0.2	+0.7
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.9	-0.8	-0.1	-0.0	+0.3
carbon source	L-Leucine (C)	-1.9	+0.0	+0.4	-0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.4	+0.3	+0.2	-0.2	-0.1
carbon source	L-Leucine (C)	-1.4	+0.6	+0.3	-0.4	+0.1
carbon source	ferulate (C); with MOPS	-1.4	+0.2	+0.4	-0.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+1.3	-0.4	-0.5	+0.3	-0.2
nitrogen source	D-2-Aminobutyric (N)	+1.2	+0.3	+0.3	+0.3	-0.2
phage	P. putida Missley MOI 0.1	+1.1	+0.3	+0.3	+0.1	+0.3