Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3525	PP_3526	PP_3527	PP_3528	PP_3529
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.2	+0.1	-4.7	+0.2	+0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.0	-0.1	-3.7	-0.1	+0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.1	-0.1	-3.6	+0.0	+0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.4	+0.2	-3.3	-0.1	+0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.1	+0.1	-3.6	-0.1	+0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.2	-0.1	-3.0	-0.3	-0.1
carbon source	ferulate (C); with MOPS	+0.3	-0.2	-1.1	-0.6	-0.7
nitrogen source	NAG (N); with MOPS	-0.5	-1.1	-0.1	-0.5	+0.1
carbon source	D-Glucose (C); with MOPS	-1.2	-0.9	-0.1	+0.0	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.7	-0.1	-0.8	-0.5	+0.1
pH	Growth at pH6 and (C) D-Glucose	-1.4	-0.2	+0.1	+0.0	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.9	-0.5	+0.4	-0.6	-0.1
temperature	Growth at 30C; with MOPS	-1.1	-0.4	+0.1	-0.3	+0.0
carbon source	carbon source 4-vinylphenol 0.01 mM	-1.2	-0.0	-0.1	-0.1	-0.3
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.9	-0.0	-0.1	-0.6	-0.1
carbon source	L-Phenylalanine 5 mM (C)	-0.1	-0.2	-1.9	+0.3	+0.2
carbon source	L-Phenylalanine 5 mM (C)	+0.1	-0.1	-1.8	+0.2	+0.0
carbon source	carbon source 3-O-methyl-glucose 50 mM	-1.2	-0.2	+0.0	+0.4	-0.3
carbon source	L-Phenylalanine 5 mM (C)	+0.3	+0.1	-1.9	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.1	-0.5	-0.6	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	-0.4	+0.2	+0.1	-0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4	-0.3	-0.9	-0.2	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.1	+0.1	-1.3	+0.2	+0.2
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.1	-0.9	-0.2	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5	-0.5	-0.2	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.0	-0.5	-0.6	+0.4
carbon source	Vanillin (C)	+0.3	+0.1	-0.9	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.3	+0.3	-0.5	+0.2
nitrogen source	2,6-diaminopimelic (N)	+1.1	-0.3	-0.7	-0.4	+0.3
carbon source	Protocatechuic Acid (C)	+0.1	+0.4	+0.9	+0.2	-0.1