Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3522	PP_3523	PP_3524	PP_3525	PP_3526
nitrogen source	2,6-diaminopimelic (N)	-3.4	-0.2	-0.9	+0.1	-0.2
temperature	Growth at 30C; with MOPS	-2.7	+0.0	+0.2	-1.1	-0.4
nitrogen source	NAG (N); with MOPS	-1.6	-0.5	+0.1	-0.8	-0.4
carbon source	D-Glucose (C); with MOPS	-0.8	-0.1	+0.0	-1.2	-0.9
nitrogen source	D-2-Aminobutyric (N)	-2.6	+0.3	-0.1	-0.3	+0.1
carbon source	ferulate (C); with MOPS	+0.2	-1.1	-1.2	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.9	-0.5	+0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0	-0.0	-0.6	+0.3	-0.6
carbon source	Trisodium citrate (C)	-2.2	-0.6	+0.5	+0.2	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.2	-0.6	+0.1	-1.4	-0.2
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.9	-0.1	+0.3	-1.2	-0.0
carbon source	Myristic (C)	-2.0	+0.0	-0.5	+0.4	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.4	-1.5	-0.4	-0.1	-0.1
stress	Growth with Chloride 500 mM; with MOPS	-1.4	-0.0	+0.4	-0.1	-0.5
carbon source	D-Glucose (C)	+0.5	-0.4	-0.9	-0.1	-0.5
nitrogen source	NAG (N); with MOPS	-0.4	+0.3	+0.4	-0.5	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.3	-0.4	+0.4	+0.3	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.3	-1.3	+0.4	-0.5	-0.0
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.5	-0.4	+0.3	-1.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.7	-0.5	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.0	-0.2	-0.5	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.2	-0.5	-1.1	-0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	+0.5	+0.2	-0.3	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.3	-0.5	-0.4	+1.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0	+0.8	+0.4	+0.3	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	+1.0	+0.6	-0.1	+0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6	+1.0	-0.5	+0.6	-0.4
phage	P. putida Sci small MOI 0.1	-1.0	+1.0	+1.3	-0.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4	+0.3	+0.8	+0.7	+0.3
phage	P. putida Sci Big MOI 0.1	+0.9	+0.9	-0.1	+0.4	-0.2