Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3516	PP_3517	PP_3518	PP_3519	PP_3520
carbon source	Tween 20 (C)	-0.1	-0.8	-0.1	-5.3	+0.0
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3	-0.1	-0.2	-4.8	-0.3
carbon source	D-Glucose (C); with MOPS	-0.0	+0.3	-0.4	-5.1	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	+0.1	+0.1	-5.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.5	+0.2	+0.1	-4.7	-0.0
carbon source	acetate (C)	+0.1	+0.1	+0.2	-5.0	-0.3
carbon source	D-Glucose (C); with MOPS	-0.3	+0.4	+0.0	-5.0	+0.1
nitrogen source	Valerolactam (N)	-4.7	+0.1	+0.2	-0.2	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	-0.2	-0.2	-4.4	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2	+0.1	+0.0	-4.4	-0.0
nitrogen source	Valerolactam (N)	-3.9	+0.0	-0.0	-0.7	+0.2
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	+0.1	-0.3	+0.0	-3.5	-0.1
stress	NaCl stress 250 mM	-0.3	-0.1	+0.1	-3.1	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.1	-0.1	+0.2	-2.7	+0.2
reactor_pregrowth	Adaptation in M9 media timecourse 3; day 3	-0.3	-0.1	+0.1	-2.8	+0.0
reactor_pregrowth	Adaptation in M9 media timecourse 1; day 3	-0.1	-0.0	+0.1	-3.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.0	+0.1	-2.6	-0.2
pH	Valerolactone (C) pH 6.5	-0.3	+0.1	-0.2	-2.2	-0.3
pH	LB 0.1x with 55.5 mM D-Glucose; pH 4.6	-0.0	-0.0	+0.0	-2.7	+0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.0	-0.4	+0.2	-2.5	+0.1
carbon source	Crotonic (C)	-0.1	-0.1	+0.0	-2.7	+0.2
phage	P. putida Sci small MOI 0.1	+0.5	+0.6	+0.1	-3.9	+0.3
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.1	-0.3	+0.3	-2.3	+0.2
carbon source	Nonanoic (C)	+0.4	+0.2	-0.3	-2.0	-0.0
temperature	Growth at 30C	-0.2	+0.3	+0.1	-2.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5	+0.5	+0.0	-1.7	+0.2
carbon source	ferulate (C); with MOPS	-0.6	+0.1	+0.0	+1.9	-0.3
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.3	-0.1	+2.9	+0.1
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.2	+0.2	+0.2	+2.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.3	+0.3	+5.5	+0.4