Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3509 and PP_3510 overlap by 4 nucleotidesPP_3510 and PP_3511 are separated by 145 nucleotidesPP_3511 and PP_3512 are separated by 189 nucleotidesPP_3512 and PP_3513 are separated by 80 nucleotides PP_3509: PP_3509 - Glyoxalase family protein, at 3,982,108 to 3,982,485 _3509 PP_3510: PP_3510 - conserved protein of unknown function, at 3,982,482 to 3,982,841 _3510 PP_3511: PP_3511 - Branched-chain-amino-acid aminotransferase, at 3,982,987 to 3,984,006 _3511 PP_3512: PP_3512 - conserved membrane protein of unknown function, at 3,984,196 to 3,984,636 _3512 PP_3513: PP_3513 - Transcriptional regulator, LysR family, at 3,984,717 to 3,985,571 _3513
Group Condition PP_3509 PP_3510 PP_3511 PP_3512 PP_3513
carbon source D-Glucose (C) -0.5 -0.0 -7.3 -0.2 +0.0
carbon source L-Lysine (C) -0.2 +0.2 -7.2 -0.4 -0.1
carbon source L-Valine (C) -0.5 -0.5 -6.6 -0.1 +0.1
carbon source Beta-alanine (C) +0.0 +0.1 -7.4 -0.3 -0.0
carbon source Hydroxy-L-Proline (C) +0.2 -0.2 -7.1 -0.4 -0.0
carbon source benzoic (C) +0.6 +0.1 -8.0 -0.1 -0.1
temperature shift Temperature shift 30_to_25; with MOPS -0.1 -0.4 -6.8 -0.3 +0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.3 -0.1 -7.5 -0.3 +0.1
nitrogen source nitrogen source Ammonium chloride 20mM +0.2 -0.0 -7.7 +0.2 -0.2
pH Growth at pH6 and (C) Trisodium citrate -0.7 -0.5 -6.1 -0.3 -0.0
temperature shift Temperature shift 10_to_25; with MOPS -0.0 -0.0 -7.0 -0.2 -0.2
pH Growth at pH6 and (C) Trisodium citrate +0.0 -0.4 -6.6 -0.4 -0.1
nitrogen source D-Lysine (N) +0.0 -0.1 -6.8 -0.5 +0.0
carbon source p-Coumaric (C) +0.0 -0.0 -7.2 -0.1 +0.0
nitrogen source L-Ornithine (N) +0.1 -0.0 -7.4 -0.0 -0.0
carbon source Phenylacetic (C) +0.2 -0.1 -7.4 +0.0 -0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.3 -0.1 -7.2 -0.3 +0.1
carbon source Ferulic Acid (C) -0.2 +0.1 -7.3 -0.0 +0.2
carbon source 1,4-Butanediol (C) -0.0 +0.2 -7.0 -0.2 -0.1
carbon source Delta-Undecalactone (C) +0.4 -0.3 -6.9 -0.4 +0.0
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.2 +0.1 -7.0 +0.1 +0.0
nitrogen source D-2-Aminobutyric (N) +0.0 -0.9 -6.1 -0.4 +0.3
carbon source L-Isoleucine (C) +0.4 -0.7 -6.2 -0.3 -0.0
carbon source Delta-Undecalactone (C) +0.2 -0.1 -7.2 +0.2 +0.0
carbon source 1,4-Butanediol (C) -0.1 +0.1 -7.1 +0.2 +0.2
nitrogen source Glycine (N) +0.3 +0.0 -6.9 -0.2 +0.1
pH pH 4 -0.9 +0.1 -5.8 +0.3 -0.2
carbon source Vanillic Acid (C) +0.4 -0.1 -6.5 -0.2 +0.2
carbon source D-Mannose (C) +0.5 -0.2 -6.3 -0.3 +0.2
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.5 -0.3 -6.5 +0.2 -0.0
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