Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3499 and PP_3500 overlap by 4 nucleotidesPP_3500 and PP_3501 are separated by 63 nucleotidesPP_3501 and PP_3502 are separated by 379 nucleotidesPP_3502 and PP_3503 are separated by 184 nucleotides PP_3499: PP_3499 - transposase, at 3,969,366 to 3,969,686 _3499 PP_3500: PP_3500 - transposase, at 3,969,683 to 3,970,018 _3500 PP_3501: PP_3501 - transposase, at 3,970,082 to 3,971,617 _3501 PP_3502: PP_3502 - transposase, at 3,971,997 to 3,972,962 _3502 PP_3503: PP_3503 - Sigma-54 dependent transcriptional regulator, at 3,973,147 to 3,974,472 _3503
Group Condition PP_3499 PP_3500 PP_3501 PP_3502 PP_3503
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. N.D. N.D. -1.8
phage P. putida PUT 7 MOI 1 N.D. N.D. N.D. N.D. -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. N.D. N.D. -0.8
nitrogen source NAG (N); with MOPS N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. N.D. N.D. -0.7
stress Growth with Chloride 200 mM; with MOPS N.D. N.D. N.D. N.D. -0.6
carbon source 3-Hydroxydecanoic (C) N.D. N.D. N.D. N.D. -0.6
carbon source Protocatechuic Acid (C) N.D. N.D. N.D. N.D. -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. N.D. N.D. N.D. -0.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.6
pH Growth at pH6 and (C) Trisodium citrate N.D. N.D. N.D. N.D. +0.6
pH pH 5 N.D. N.D. N.D. N.D. +0.6
carbon source Tween 20 (C) N.D. N.D. N.D. N.D. +0.6
carbon source carbon source Glycerol 108.6 mM N.D. N.D. N.D. N.D. +0.6
pH Growth at pH9 and (C) Trisodium citrate N.D. N.D. N.D. N.D. +0.6
nitrogen source Propiolactam (N) N.D. N.D. N.D. N.D. +0.6
carbon source carbon source 2-Deoxy-D-glucose 50 mM N.D. N.D. N.D. N.D. +0.6
temperature Growth at 30C; with MOPS N.D. N.D. N.D. N.D. +0.7
pH pH 9 N.D. N.D. N.D. N.D. +0.7
pH Growth at pH6 and (C) D-Glucose N.D. N.D. N.D. N.D. +0.7
carbon source carbon source Bisabolol 45 mM N.D. N.D. N.D. N.D. +0.7
carbon source carbon source 4-vinylphenol 0.1 mM N.D. N.D. N.D. N.D. +0.7
carbon source carbon source 2-Deoxy-D-glucose 100 mM N.D. N.D. N.D. N.D. +0.7
pH pH 8 N.D. N.D. N.D. N.D. +0.8
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. N.D. N.D. N.D. +0.8
carbon source L-Leucine (C) N.D. N.D. N.D. N.D. +0.9
carbon source carbon source D-Glucose 55.5 mM N.D. N.D. N.D. N.D. +0.9
pH pH 6 N.D. N.D. N.D. N.D. +1.0
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