Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3484 and PP_3485 are separated by 252 nucleotidesPP_3485 and PP_3486 are separated by 12 nucleotidesPP_3486 and PP_3487 are separated by 194 nucleotidesPP_3487 and PP_3488 overlap by 4 nucleotides PP_3484: PP_3484 - Response regulator receiver protein, at 3,948,109 to 3,948,639 _3484 PP_3485: PP_3485 - conserved exported protein of unknown function, at 3,948,892 to 3,949,533 _3485 PP_3486: PP_3486 - putative cytochrome c, at 3,949,546 to 3,951,036 _3486 PP_3487: PP_3487 - conserved exported protein of unknown function, at 3,951,231 to 3,951,896 _3487 PP_3488: PP_3488 - Sco1/SenC family protein, at 3,951,893 to 3,952,549 _3488
Group Condition PP_3484 PP_3485 PP_3486 PP_3487 PP_3488
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -7.1 +0.4 +0.2 -1.9 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -6.1 -0.0 -0.7 -1.8 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -7.2 -0.6 +0.1 -0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -6.6 -0.3 +0.0 +0.1 -0.5
carbon source L-Lysine (C) -6.7 +0.0 -0.1 -0.6 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -6.4 +0.2 +0.2 -0.7 -0.3
carbon source D-Glucose (C) -6.5 -0.0 +0.0 +0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.8 -0.3 -0.5 -2.2 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -6.4 +0.0 +0.0 -0.5 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.8 -0.2 -0.3 -0.2 -1.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -5.5 +0.0 -0.5 -0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -6.1 -0.2 -0.0 +0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -6.1 -0.2 -0.1 +0.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -5.9 -0.1 -0.1 -0.3 +0.4
carbon source Glycerol (C) -5.7 -0.2 +0.0 +0.3 -0.5
carbon source 1,2-Propanediol (C) -5.9 +0.2 -0.1 +0.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -6.2 +0.1 -0.0 +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -5.2 -0.0 +0.2 -0.6 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -6.0 +0.2 -0.5 +0.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -5.4 +0.1 +0.1 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -5.4 -0.1 +0.2 +0.3 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -5.1 -0.2 -0.0 -0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -5.7 -0.1 -0.2 +0.6 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -5.0 -0.0 +0.2 -0.5 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.9 -0.1 +0.2 -0.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -5.4 -0.1 -0.1 +0.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -4.9 -0.3 +0.1 +0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -5.2 -0.3 +0.4 +0.7 -0.2
carbon source 1,4-Butanediol (C) -4.7 -0.1 -0.1 +0.6 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.7 -0.3 -0.3 +1.6 +0.2
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