Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3474 and PP_3475 overlap by 4 nucleotidesPP_3475 and PP_3476 overlap by 29 nucleotidesPP_3476 and PP_3477 overlap by 7 nucleotidesPP_3477 and PP_3478 overlap by 4 nucleotides PP_3474: PP_3474 - putative Curli fiber protein CsgE, at 3,940,271 to 3,940,672 _3474 PP_3475: PP_3475 - putative type II secretory pathway, pseudopilin pulG-related signal peptide protein, at 3,940,669 to 3,941,199 _3475 PP_3476: PP_3476 - Type II secretion system protein G, at 3,941,171 to 3,941,557 _3476 PP_3477: PP_3477 - Putative secretion type II protein related to protein G, at 3,941,551 to 3,942,030 _3477 PP_3478: PP_3478 - putative Secretion protein, at 3,942,027 to 3,943,892 _3478
Group Condition PP_3474 PP_3475 PP_3476 PP_3477 PP_3478
carbon source 2,3-Butanediol (C) -3.7 -0.3 -0.3 -1.0 -0.3
carbon source Delta-Nonalactone (C) -3.2 -0.5 +0.2 -0.2 -1.0
carbon source Delta-Decalactone (C) -2.6 -0.7 +0.1 -0.8 -0.2
carbon source Delta-Undecalactone (C) -3.0 -0.3 -0.1 -0.3 -0.3
carbon source Delta-Decalactone (C) -1.7 -0.8 -0.7 -0.4 -0.4
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -2.4 -0.5 -0.0 -0.3 -0.1
carbon source Decanoic (C) -2.2 -0.3 -0.0 -0.1 -0.6
stress R2A with Fusaric 480 ug/mL -1.4 -0.4 -0.7 -0.4 -0.1
phage P. putida PUT 7 MOI 1 -0.3 -1.0 -0.6 -0.1 -0.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -0.0 +0.1 -1.1 +0.2
stress R2A with Fusaric 480 ug/mL -1.3 -0.0 -0.2 -0.5 -0.6
stress R2A with Fusaric 480 ug/mL -1.5 -0.2 +0.0 -0.6 -0.5
carbon source Delta-Undecalactone (C) -2.2 -0.1 +0.2 -0.6 +0.1
stress pinene 10 vol% -1.5 -0.6 +0.1 -0.5 -0.2
nitrogen source Ammonium chloride and TNT (N) -1.8 -0.5 +0.3 -0.6 +0.0
stress Geraniol 1 vol% -2.2 -0.2 +0.0 -0.1 -0.2
carbon source ferulate (C); with MOPS -2.3 -0.2 +0.1 -0.1 +0.1
phage P. putida Sci small MOI 0.1 -0.1 -1.3 -0.8 +0.2 -0.4
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -1.7 -0.1 -0.1 -0.6 +0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -0.0 -0.2 -1.3 +0.2
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -1.7 -0.1 +0.2 -0.4 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 +0.2 +0.1 -0.7 -0.2
nitrogen source Ammonium chloride and TNT (N) -1.6 -0.5 +0.3 -0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.1 +0.6 -1.0 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -0.1 -0.9 +0.9 -0.1
temperature Growth at 25C +0.4 +0.3 +0.2 -1.0 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 +0.0 +1.3 +0.2 -0.5
carbon source ferulate (C); with MOPS -1.0 +0.5 +0.2 +0.2 +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.4 +1.0 +0.5 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +0.9 +0.0 +0.8 +0.6
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