Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3471	PP_3472	PP_3473	PP_3474	PP_3475
carbon source	2,3-Butanediol (C)	-1.1	+0.2	-0.8	-3.7	-0.3
carbon source	Delta-Undecalactone (C)	+0.1	-0.1	-1.3	-3.0	-0.3
carbon source	Delta-Undecalactone (C)	+0.1	-0.0	-1.4	-2.2	-0.1
carbon source	Delta-Nonalactone (C)	+0.4	-0.1	-0.2	-3.2	-0.5
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.6	+0.2	-0.3	-2.4	-0.5
stress	Geraniol 1 vol%	-0.2	-0.1	-0.9	-2.2	-0.2
carbon source	Decanoic (C)	-0.4	-0.2	-0.5	-2.2	-0.3
phage	P. putida Missley MOI 0.1	-0.3	-0.3	-0.7	-1.2	-0.8
carbon source	Delta-Decalactone (C)	+0.0	+0.2	-0.4	-2.6	-0.7
carbon source	ferulate (C); with MOPS	+0.1	+0.3	-1.1	-2.3	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.3	-0.7	-1.8	-0.0
phage	P. putida PUT 7 MOI 1	-1.2	-1.0	+0.4	-0.3	-1.0
carbon source	Delta-Decalactone (C)	+0.2	+0.0	-0.8	-1.7	-0.8
stress	R2A with Fusaric 480 ug/mL	-0.4	-0.0	-1.3	-1.3	-0.0
carbon source	Delta-Dodecalactone (C)	-0.0	+0.1	-1.2	-1.7	-0.1
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.8	-0.1	-0.3	-1.7	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.5	-0.3	-0.4	-1.1
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.7	-0.0	-0.2	-1.7	-0.1
nitrogen source	Ammonium chloride and TNT (N)	+0.6	-0.1	-1.0	-1.6	-0.5
nitrogen source	Ammonium chloride and TNT (N)	+0.5	-0.0	-0.5	-1.8	-0.5
temperature	Growth at 30C; with MOPS	-0.7	-0.5	-1.1	+0.2	-0.1
phage	P. putida Sci small MOI 0.1	+0.3	+0.2	-1.2	-0.1	-1.3
stress	R2A with Fusaric 480 ug/mL	+0.2	+0.2	-0.6	-1.4	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0	-0.1	-0.3	-0.8	+0.4
nitrogen source	Ammonium chloride and TNT (N)	+0.8	-0.1	-0.5	-1.3	-0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+1.0	+0.1	-0.8	-1.1	+0.0
carbon source	D-Glucose (C)	-0.2	+0.2	+0.7	-0.5	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4	+0.1	-0.9	+0.6	+0.6
carbon source	Ethyl decanoate (C)	-0.3	+0.0	+0.9	+1.4	-0.1
carbon source	Ethyl decanoate (C)	-0.1	-0.2	+0.8	+1.4	+0.1