Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3450	PP_3451	PP_3452	PP_3453	PP_3454
carbon source	2,3-Butanediol (C)	+0.1	+0.5	+0.3	-2.5	-2.6
stress	2-Ethylhexanol 0.4 vol%	+0.2	-0.1	-0.0	-1.4	-1.6
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.2	-0.5	+0.0	-0.7	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.1	-1.6	+0.0	-0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	-0.6	+0.1	-0.0	-1.3
carbon source	Delta-Undecalactone (C)	-0.0	+0.1	+0.0	-1.1	-0.9
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	+0.2	-0.0	-0.0	-0.6	-1.4
pH	pH 4	-0.0	-0.4	-0.3	-1.1	+0.0
phage	P. putida Sci small MOI 0.1	-0.4	-0.1	-0.3	+0.2	-1.3
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+0.1	-0.3	-0.0	-1.4	+0.0
phage	P. putida Sci Big MOI 0.1	+0.1	-1.6	-0.2	+0.1	-0.0
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.3	+0.1	-0.3	-0.7	-0.3
carbon source	Delta-Decalactone (C)	-0.1	+0.1	-0.2	-0.8	-0.6
carbon source	Delta-Undecalactone (C)	+0.1	+0.1	+0.0	-1.0	-0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.0	-0.0	-0.1	-1.5	+0.1
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.2	+0.2	-0.5	-0.5	-0.4
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.1	-0.2	+0.3	-1.3	+0.1
carbon source	Delta-Decalactone (C)	-0.1	+0.4	-0.0	-0.8	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.3	+0.0	-1.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.5	+0.1	-0.4	-0.8
phage	P. putida Missley MOI 0.1	-0.6	+0.6	-0.4	-0.2	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.1	-0.8	+0.5	-0.3	-0.0
stress	Geraniol 1 vol%	+0.4	+2.3	+0.0	-1.8	-1.4
supernatant	LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter	+0.2	+0.8	-0.2	-0.5	+0.3
carbon source	Myristic (C)	+0.3	+0.4	+0.7	+0.2	-0.5
carbon source	1-Pentanol (C)	-0.1	-0.1	+0.0	+0.8	+1.0
micoeukaryotes	C.elegans, mixed culture-2	+0.0	+0.6	+0.1	+0.4	+0.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.0	+0.4	+0.2	+0.8	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.0	+1.1	+0.1	+0.2	+0.9
nitrogen source	3,5-Dinitrosalicylic (N)	-0.1	+0.2	+0.3	+4.7	-0.1