Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3449	PP_3450	PP_3451	PP_3452	PP_3453
phage	P. putida Sci small MOI 0.1	-6.2	-0.3	+0.5	-0.2	-0.3
nitrogen source	2,6-diaminopimelic (N)	-3.1	-0.2	-0.3	-0.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-2.0	-0.1	-0.9	+0.1	-0.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-1.9	-0.0	+0.1	+0.2	-1.1
carbon source	D-Glucose (C)	-1.3	-0.2	-0.8	-0.3	+0.0
temperature shift	Temperature shift 30_to_34; with MOPS	-2.1	-0.3	+0.2	-0.2	-0.2
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.8	+0.1	-0.3	-0.0	-1.4
nitrogen source	NAG (N)	-2.3	-0.0	-0.1	-0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5	-0.1	-1.6	+0.0	-0.1
carbon source	2,3-Butanediol (C)	-0.7	+0.1	+0.5	+0.3	-2.5
no stress control	Growth with no stress	-1.6	-0.2	-0.1	-0.3	-0.1
nitrogen source	Urea (N)	-2.3	-0.0	+0.1	-0.1	+0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-1.6	+0.1	-0.3	+0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.9	+0.0	-0.9	+0.0	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-1.0	-0.2	+0.2	-0.5	-0.5
nitrogen source	nitrate (N)	-1.2	-0.2	-0.3	-0.4	+0.1
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.4	-0.1	-0.2	+0.3	-1.3
temperature shift	Temperature shift 10_to_30; with MOPS	-1.7	+0.1	+0.1	-0.3	+0.2
temperature shift	Temperature shift 10_to_30	-1.9	+0.0	+0.4	-0.1	+0.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.9	+0.0	+0.5	-0.5	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7	+0.1	-0.8	+0.5	-0.3
nitrogen source	Propandiamine (N)	-2.3	+0.0	+0.9	+0.2	+0.0
nitrogen source	NAG (N); with MOPS	-1.1	-0.3	+0.4	+0.3	+0.1
pH	Growth at pH9 and (C) Trisodium citrate	-1.1	-0.1	+0.6	-0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7	+0.0	+0.3	-0.3	-1.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.1	-0.0	+0.4	+0.2	+0.8
stress	Geraniol 1 vol%	+0.1	+0.4	+2.3	+0.0	-1.8
pH	Growth at pH7 and (C) Trisodium citrate	+1.2	+0.1	+0.3	-0.1	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.8	+0.2	+0.1	+0.4	+0.2
nitrogen source	3,5-Dinitrosalicylic (N)	-0.3	-0.1	+0.2	+0.3	+4.7