Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3446	PP_3447	PP_3448	PP_3449	PP_3450
nitrogen source	NAG (N); with MOPS	-0.2	-5.0	-0.5	-1.1	-0.3
pH	Growth at pH7 and (C) D-Glucose	-0.4	-5.2	+0.0	-1.0	+0.0
phage	P. putida Sci small MOI 0.1	-0.1	+0.0	-0.0	-6.2	-0.3
pH	Growth at pH6 and (C) D-Glucose	-0.4	-5.1	-0.3	-0.5	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.1	-5.9	+0.3	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-4.2	-0.1	-0.9	+0.1
pH	Growth at pH6 and (C) D-Glucose	-0.0	-5.1	-0.1	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-4.1	+0.2	-0.4	-0.2
nitrogen source	2,6-diaminopimelic (N)	-0.9	-0.2	+0.5	-3.1	-0.2
nitrogen source	nitrogen source nitrite 1mM	-0.3	-2.4	-0.0	-0.8	-0.2
carbon source	carbon source D-Glucose 55.5 mM	+0.1	-3.2	-0.2	-0.0	-0.2
carbon source	ferulate (C); with MOPS	+0.1	-2.5	+0.1	-0.7	-0.2
carbon source	L-Leucine (C)	+0.0	-2.0	-0.3	-0.9	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.0	-2.4	+0.1	-0.2	-0.3
carbon source	Valerolactone (C)	+0.0	-3.3	+0.3	-0.1	+0.3
carbon source	Delta-Undecalactone (C)	-0.0	-3.0	+0.1	+0.3	-0.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5	-1.6	+0.1	-0.4	+0.0
nitrogen source	Urea (N)	+0.1	+0.5	-0.3	-2.3	-0.0
temperature shift	Temperature shift 30_to_34; with MOPS	-0.2	+0.7	+0.1	-2.1	-0.3
nitrogen source	Propandiamine (N)	+0.1	+0.3	+0.1	-2.3	+0.0
stress	R2A with Fusaric 240 ug/mL	-0.0	+1.1	-0.5	-1.6	-0.1
nitrogen source	NAG (N)	-0.1	+1.9	+0.0	-2.3	-0.0
carbon source	D-Glucose (C)	-0.2	+1.6	-0.0	-1.3	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9	+1.2	+0.5	-0.7	-0.2
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.1	+1.4	-0.1	-1.1	-0.0
carbon source	ferulate (C); with MOPS	-0.1	+0.8	-0.7	+1.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	+2.1	-0.1	-0.1	-0.1
carbon source	Trisodium citrate (C)	-0.6	+1.8	-0.2	+0.9	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.8	+0.4	+2.8	+0.2
temperature	Growth at 25C; with MOPS	+0.1	+1.8	-0.2	+1.2	-0.1