Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3431	PP_3432	PP_3433	PP_3434	PP_3435
carbon source	L-Phenylalanine 5 mM (C)	-0.0	-0.1	-5.9	-5.2	-0.3
carbon source	L-Phenylalanine 5 mM (C)	+0.1	-0.1	-4.9	-5.3	-0.5
carbon source	L-Phenylalanine 5 mM (C)	-0.0	-0.1	-5.0	-5.3	-0.0
nitrogen source	L-Phenylalanine (N)	+0.0	+0.0	-2.5	-3.1	-0.1
nitrogen source	L-Phenylalanine (N)	+0.2	-0.3	-3.3	-1.8	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	+0.0	-0.1	-2.0	-1.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.1	-0.3	-2.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.0	-0.3	-2.0	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	+0.1	-0.5	-1.9	-0.2
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.0	-0.1	-0.2	-1.9	-0.3
carbon source	3-Hydroxydecanoic (C)	-0.3	+0.0	-0.3	-1.6	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.0	+0.3	-0.1	-2.0	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.1	-0.2	-1.6	-0.6	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.2	-0.1	-1.3	-0.9	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-0.2	-0.9	-0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.2	-0.5	-1.2	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.0	-0.0	-0.2	-2.0	+0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.2	-0.1	-1.9	-0.3	-0.0
carbon source	Valerolactone (C)	+0.0	-0.2	-0.8	-1.4	+0.4
temperature shift	Temperature shift 30_to_21; with MOPS	+0.2	-0.2	-0.1	-1.9	+0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	+0.1	+0.1	-0.7	-1.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.1	+0.1	-0.3	-1.6	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4	+0.2	-0.7	-0.7	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.1	-0.3	-1.4	-0.0
micoeukaryotes	C.elegans, mixed culture-2	+0.4	-0.1	-0.4	-1.2	+0.2
nitrogen source	2,6-diaminopimelic (N)	-0.5	-0.8	+0.4	+0.8	-0.1
nitrogen source	nitrogen source nitrite 1mM	-0.1	-0.4	-0.3	+1.2	+0.3
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.2	-0.2	-0.1	+1.5	+0.2
carbon source	Crotonic (C)	+0.1	-0.3	-0.1	+1.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	+0.1	+1.2	+0.5