Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3428	PP_3429	PP_3430	PP_3431	PP_3432
stress	R2A with Fusaric 480 ug/mL	-1.8	-0.3	+0.2	-0.0	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-1.6	+0.2	-0.3	-0.1
stress	R2A with Fusaric 480 ug/mL	-1.7	-0.2	+0.1	+0.1	-0.1
carbon source	L-Proline (C)	-0.2	-0.4	-0.2	-0.5	-0.3
stress	R2A with Fusaric 480 ug/mL	-1.5	+0.1	-0.1	+0.1	-0.2
carbon source	ferulate (C); with MOPS	-0.9	+0.1	-0.5	+0.1	-0.3
stress	R2A with Fusaric 480 ug/mL	-1.5	-0.1	-0.0	-0.1	+0.2
stress	R2A with Fusaric 480 ug/mL	-1.7	-0.1	-0.0	+0.1	+0.2
stress	R2A with Fusaric 480 ug/mL	-1.1	-0.2	+0.0	+0.0	-0.2
stress	R2A with Fusaric 240 ug/mL	-0.3	-0.8	-0.2	-0.1	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	-0.6	-0.2	-0.5	+0.1
carbon source	ferulate (C); with MOPS	-1.1	+0.3	-0.1	-0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.7	+0.4	-0.2	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	-1.4	+0.1	+0.2	-0.2
carbon source	L-Leucine (C)	-0.9	+0.2	-0.1	-0.3	+0.2
carbon source	ferulate (C); with MOPS	-0.6	+0.1	-0.2	-0.3	+0.2
phage	P. putida Sci Big MOI 0.1	-0.4	+0.5	-0.5	-0.5	+0.0
nitrogen source	2,6-diaminopimelic (N)	-0.2	+0.1	+0.6	-0.5	-0.8
micoeukaryotes	C.elegans, mixed culture-2	-1.0	+0.1	-0.0	+0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.3	-0.2	+0.2	+0.4
phage	P. putida PUT 7 MOI 1	-0.4	-0.3	+0.4	+0.3	+0.1
pH	pH 9	+0.0	+0.3	-0.5	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.2	-0.3	+0.2	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	-0.3	-0.1	-0.1	+0.1
nitrogen source	Propandiamine (N)	-0.4	+0.5	+0.3	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	+0.2	+0.4	+0.4
stress	Growth with Chloride 500 mM; with MOPS	-0.1	+0.4	+0.2	+0.5	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.6	+0.3	+0.4	+0.2
nitrogen source	NAG (N); with MOPS	+0.5	+0.8	+0.2	-0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.5	-0.1	-0.0	-0.2	+0.2