Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3421	PP_3422	PP_3423	PP_3424	PP_3425
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.0	-0.2	-0.1	-1.2
pH	Valerolactone (C) pH 6.5	-0.3	+0.1	-0.1	-1.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.0	-0.3	+0.1	+0.5	-1.4
pH	pH 8	+0.4	-0.2	+0.2	-0.2	-1.2
nitrogen source	2,6-diaminopimelic (N)	+0.3	+0.1	-1.3	+0.1	-0.2
carbon source	Nonanoic (C)	-0.4	+0.3	-0.2	-0.0	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	+0.3	-0.2	+0.0	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.0	-0.1	+0.2	-1.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.4	-0.4	-0.5	+0.4
phage	P. putida Sci small MOI 0.1	+0.1	+0.5	-0.4	-0.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.0	-0.4	-0.5	+0.6
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.2	-0.0	+0.5	-0.3	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.0	+0.0	+0.3	+0.3	-1.0
phage	P. putida Sci small MOI 0.1	+0.2	+0.4	-0.0	+0.2	-1.1
pH	Growth at pH6 and (C) D-Glucose	+0.1	+0.1	-0.5	-0.4	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	+0.4	-0.5	+0.1	-0.4
carbon source	carbon source Glycerol 108.6 mM	+0.4	-0.2	+0.5	-0.1	-0.7
nitrogen source	NAG (N); with MOPS	-0.0	-0.6	+0.2	-0.2	+0.7
phage	P. putida South MOI 10	+0.1	-0.2	+0.3	-0.7	+0.5
pH	pH 9	+0.3	+0.1	+0.7	-0.7	-0.3
pH	pH 5	+0.3	-0.3	+0.5	-0.2	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	+0.7	-0.6	-0.6	+0.6
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.3	-0.3	+0.3	+0.3	-0.4
pH	pH 6	+0.4	-0.3	+0.5	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.3	+0.3	+0.5	+0.5
carbon source	Valeric (C)	+0.1	+0.3	-0.5	+0.4	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.4	+0.1	+0.8	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	+0.3	+0.4	+0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.8	+0.2	+0.7	+0.5	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5	+0.4	+0.6	+0.6	+0.2