Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3401	PP_3402	PP_3403	PP_3404	PP_3405
phage	P. putida Sci Big MOI 0.1	-0.4	-0.8	-0.5	-1.0	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-2.2	-0.0	+0.3	-0.2	-0.5
carbon source	ferulate (C); with MOPS	-3.5	+0.0	+0.2	+1.0	-0.0
carbon source	Myristic (C)	-1.1	-0.0	-0.6	-0.8	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.8	-0.1	-0.3	-0.6	-0.4
phage	P. putida Sci small MOI 0.1	-0.4	-0.7	-0.2	-0.4	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.8	+0.2	+0.4	-1.0	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.9	-0.1	+0.1	-0.7	+0.0
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.1	-0.2	+0.1	-1.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-0.6	-0.5	+0.7	-0.0
carbon source	carbon source D-Glucose 55.5 mM	+0.4	-0.5	-0.0	-0.7	-0.4
nitrogen source	NAG (N); with MOPS	-1.2	-0.2	-0.1	+0.4	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.7	+0.0	+0.3	-0.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	+0.5	-0.3	-0.3	-0.5
carbon source	1,3-Butandiol (C)	-1.0	-0.2	-0.2	+0.5	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	+0.3	+0.3	-0.5	-0.4
stress	R2A with Fusaric 240 ug/mL	-0.7	+0.2	-0.5	+0.6	-0.2
temperature shift	Temperature shift 10_to_25; with MOPS	+0.8	+0.5	+0.0	-1.7	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	-0.3	-0.2	-0.4	-0.5
carbon source	ferulate (C); with MOPS	+0.3	-0.2	-0.2	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.2	-0.7	+0.5	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4	+0.4	+0.3	-0.8	-0.0
pH	Growth at pH6 and (C) D-Glucose	-0.7	+0.4	-0.1	+0.5	+0.4
nitrogen source	nitrogen source nitrite 1mM	+1.1	-0.1	-0.4	+0.1	-0.2
pH	Valerolactone (C) pH 6.5	-0.7	+0.0	+0.4	+1.1	-0.1
carbon source	ferulate (C); with MOPS	+0.3	-0.3	-0.2	+1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.1	-0.2	+1.2	-0.1
nitrogen source	Urea (N); with MOPS	+0.9	+0.2	-0.3	+0.4	+0.3
nitrogen source	2,6-diaminopimelic (N)	+1.0	-0.1	+0.0	+0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2	+0.3	+0.4	+0.6	+0.2