Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3400	PP_3401	PP_3402	PP_3403	PP_3404
phage	P. putida Sci Big MOI 0.1	+0.0	-0.4	-0.8	-0.5	-1.0
carbon source	ferulate (C); with MOPS	-0.2	-3.5	+0.0	+0.2	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	-2.2	-0.0	+0.3	-0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.0	+0.2	-0.0	-0.3	-0.9
carbon source	Myristic (C)	+0.3	-1.1	-0.0	-0.6	-0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.5	-0.9	-0.1	+0.1	-0.7
phage	P. putida South MOI 10	-0.7	-0.6	-0.4	+0.2	-0.5
nitrogen source	NAG (N); with MOPS	-0.5	-1.2	-0.2	-0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-1.0	-0.6	-0.5	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	+0.4	-0.8	-0.1	-0.3	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.0	-0.6	+0.3	+0.3	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.7	-0.7	+0.0	+0.3	-0.3
carbon source	D-Glucose (C)	-1.0	+0.4	+0.3	-0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.3	+0.2	-0.7	+0.5
phage	P. putida Sci small MOI 0.1	+1.0	-0.4	-0.7	-0.2	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	-0.8	+0.2	+0.4	-1.0
pH	Growth at pH6 and (C) D-Glucose	-0.5	-0.7	+0.4	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.4	-0.1	+0.2	+0.7
stress	R2A with Fusaric 240 ug/mL	+0.1	-0.7	+0.2	-0.5	+0.6
temperature shift	Temperature shift 10_to_25; with MOPS	+0.2	+0.8	+0.5	+0.0	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+1.2	-0.3	-0.2	-0.4
carbon source	carbon source D-Glucose 55.5 mM	+0.8	+0.4	-0.5	-0.0	-0.7
carbon source	D-Glucose (C); with MOPS	-0.9	+0.5	-0.1	+0.2	+0.4
carbon source	4-Aminobutyric 10 mM (C)	+0.6	-0.8	-0.1	+0.4	+0.3
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.8	+0.6	-0.7	-0.0	-0.3
pH	Valerolactone (C) pH 6.5	-0.0	-0.7	+0.0	+0.4	+1.1
carbon source	ferulate (C); with MOPS	+0.3	+0.3	-0.3	-0.2	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.4	-0.1	-0.2	+1.2
phage	P. putida PUT 7 MOI 1	+1.1	+0.6	+0.0	+0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+1.2	+0.3	+0.4	+0.6