Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3399	PP_3400	PP_3401	PP_3402	PP_3403
carbon source	ferulate (C); with MOPS	+0.3	-0.2	-3.5	+0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.2	-1.0	-0.6	-0.5
phage	P. putida Sci Big MOI 0.1	-0.4	+0.0	-0.4	-0.8	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.2	-2.2	-0.0	+0.3
nitrogen source	NAG (N); with MOPS	+0.2	-0.5	-1.2	-0.2	-0.1
carbon source	Myristic (C)	-0.3	+0.3	-1.1	-0.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.5	-0.3	+0.2	-0.7
phage	P. putida South MOI 10	+0.1	-0.7	-0.6	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.5	-0.8	+0.2	+0.0
stress	Growth with Chloride 200 mM	+0.3	-0.9	-0.5	-0.2	+0.0
pH	Growth at pH7 and (C) Trisodium citrate	+0.0	-1.0	-0.4	+0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	-0.7	-0.7	+0.0	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.3	-1.0	+0.2	-0.0	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.1	-1.0	-0.6	+0.3	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.2	-0.5	-0.7	+0.4	-0.1
carbon source	D-Glucose (C); with MOPS	-0.2	-0.9	+0.5	-0.1	+0.2
carbon source	D-Glucose (C)	+0.1	-1.0	+0.4	+0.3	-0.1
phage	P. putida Sci small MOI 0.1	+0.1	+1.0	-0.4	-0.7	-0.2
no stress control	Growth with no stress	+0.1	+0.4	-0.7	-0.4	+0.3
phage	P. put South MOI 10	+0.3	+0.5	-1.1	+0.1	+0.0
carbon source	4-Aminobutyric 10 mM (C)	+0.1	+0.6	-0.8	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.4	+1.2	-0.3	-0.2
nitrogen source	nitrogen source nitrite 1mM	-0.2	-0.2	+1.1	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	+0.5	-0.8	+0.2	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.3	+0.8	-0.1	-0.6	+0.3
carbon source	carbon source D-Glucose 55.5 mM	+0.3	+0.8	+0.4	-0.5	-0.0
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.5	+0.8	+0.6	-0.7	-0.0
carbon source	Valerolactone (C)	+0.2	+0.8	+0.8	-0.2	+0.2
phage	P. putida PUT 7 MOI 1	+0.1	+1.1	+0.6	+0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.4	+1.2	+0.3	+0.4