Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3390	PP_3391	PP_3392	PP_3393	PP_3394
phage	P. put South MOI 10	-0.2	-0.1	-5.3	+0.3	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.2	-0.3	-4.5	+0.0	-0.5
carbon source	Trisodium citrate (C)	+0.1	+0.4	-4.6	+0.0	-0.2
carbon source	D-Glucose (C)	+0.1	-0.2	-4.6	+0.2	+0.6
nitrogen source	Propandiamine (N)	+0.0	-0.3	-3.8	-0.1	+0.2
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.0	-0.2	-3.1	+0.1	-0.4
carbon source	D-Glucose (C)	+0.0	+0.1	-3.5	+0.3	+0.2
carbon source	ferulate (C); with MOPS	-0.1	-0.3	-2.7	+0.4	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.3	-0.2	-3.1	+0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.5	-1.6	-0.3	-0.2
pH	D-Glucose (C) pH 6	+0.1	+0.0	-2.2	-0.1	-0.4
phage	P. putida Missley MOI 0.1	+0.6	+0.4	-4.0	+0.4	+0.1
carbon source	D-Glucose (C); with MOPS	-0.2	+0.2	-2.4	-0.2	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.1	-0.0	-2.2	-0.1	+0.1
stress	3-methyl-1-butanol 0.4 vol%	+0.1	+0.1	-2.1	-0.0	-0.2
carbon source	D-Fructose (C)	-0.1	+0.0	-1.8	+0.3	-0.3
pH	Valerolactone (C) pH 6.5	-0.3	-0.3	-1.4	+0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.1	+0.4	-1.6	-0.3	-0.5
carbon source	5-Aminovaleric 10 mM (C)	+0.0	+0.1	-2.0	+0.3	-0.1
phage	P. putida South MOI 0.1	+0.1	-0.3	-1.3	+0.3	-0.4
carbon source	L-Leucine (C)	-0.1	-0.3	-1.7	+0.3	+0.6
carbon source	Delta-Nonalactone (C)	+0.2	+0.5	-1.4	+0.1	-0.3
carbon source	ferulate (C); with MOPS	+0.2	+0.4	-1.6	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.5	-0.9	+0.5	+0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4	+0.1	+0.8	+0.5	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.2	-0.1	+1.7	+0.3	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.3	-0.1	+2.0	+0.1	-0.3
phage	P. putida Sci small MOI 0.1	+0.3	+0.2	+1.8	+0.2	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.4	+4.4	+0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	+4.3	+0.4	-0.6