Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3382 and PP_3383 are separated by 6 nucleotidesPP_3383 and PP_3384 are separated by 3 nucleotidesPP_3384 and PP_3385 are separated by 350 nucleotidesPP_3385 and PP_3386 are separated by 13 nucleotides PP_3382: PP_3382 - gluconate 2-dehydrogenase cytochrome c subunit, at 3,828,335 to 3,829,588 _3382 PP_3383: PP_3383 - gluconate 2-dehydrogenase flavoprotein subunit, at 3,829,595 to 3,831,379 _3383 PP_3384: PP_3384 - gluconate 2-dehydrogenase gamma subunit, at 3,831,383 to 3,832,123 _3384 PP_3385: PP_3385 - conserved protein of unknown function, at 3,832,474 to 3,833,322 _3385 PP_3386: PP_3386 - type 6 secretion system protein, at 3,833,336 to 3,835,513 _3386
Group Condition PP_3382 PP_3383 PP_3384 PP_3385 PP_3386
carbon source D-Glucose (C) -0.2 -0.0 -1.0 -0.5 -0.3
temperature shift Temperature shift 30_to_25 +0.0 -0.1 -1.7 -0.1 -0.0
carbon source gluconate (C) -0.3 -0.3 -1.0 -0.2 -0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 +0.0 -1.2 -0.1 -0.5
pH pH 6 +0.0 -0.2 -1.1 -0.4 +0.0
nitrogen source nitrate (N) -0.1 +0.1 -1.4 -0.2 -0.0
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.2 -0.0 -1.0 -0.1 -0.3
carbon source Myristic (C) +0.1 -0.1 -1.8 +0.2 +0.2
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.2 -0.0 -1.1 -0.2 +0.1
carbon source ferulate (C); with MOPS -0.2 +0.0 -1.7 +0.4 +0.0
carbon source carbon source 4-vinylphenol 0.01 mM +0.2 -0.4 -1.0 -0.3 +0.1
pH Growth at pH6 and (C) D-Glucose -0.2 +0.1 -1.4 +0.1 +0.2
carbon source D-Glucose (C); with MOPS -0.2 +0.2 -1.0 -0.0 -0.2
nitrogen source D-2-Aminobutyric (N) +0.3 +0.1 -1.3 -0.4 +0.0
temperature Growth at 10C -0.4 -0.4 -0.6 +0.2 +0.0
temperature shift Temperature shift 10_to_30 -0.2 +0.1 -1.1 +0.1 +0.1
pH pH 7 +0.2 +0.0 -0.7 -0.4 -0.3
nitrogen source nitrogen source nitrate 5mM -0.0 -0.1 -0.8 +0.3 -0.3
pH Valerolactone (C) pH 6.5 -0.2 +0.2 -1.1 +0.1 +0.1
stress Growth with Chloride 500 mM; with MOPS -0.3 +0.1 -0.8 +0.2 +0.2
pH pH 9 +0.5 -0.1 -0.1 -0.8 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.0 +0.3 +0.3 -0.6
nitrogen source nitrogen source Ammonium chloride 20mM +0.2 -0.0 -0.9 +0.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.0 -0.0 +0.9 -0.4 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -0.3 +0.9 -0.4 +0.1
phage P. putida PUT 7 MOI 1 +0.3 +0.6 -0.3 +0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.3 +0.8 +0.4 -0.1
phage P. putida Sci Big MOI 0.1 +0.2 +0.4 +0.7 +0.4 +0.1
phage P. putida Sci small MOI 0.1 +0.3 +0.4 +0.8 +0.2 +0.2
phage P. putida Missley MOI 0.1 +0.7 +0.3 +0.3 +0.4 +0.4
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