Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3362	PP_3363	PP_3364	PP_3365	PP_3366
pH	Growth at pH7 and (C) D-Glucose	-0.4	-1.1	+0.0	-5.3	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	-0.7	-0.4	-5.2	-0.1
carbon source	acetate (C)	-0.1	-0.6	-0.2	-5.2	-0.1
temperature	Growth at 30C; with MOPS	+0.0	-0.4	-0.3	-5.3	-0.2
carbon source	ferulate (C); with MOPS	+0.3	-0.6	-0.0	-5.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.2	-0.5	-0.0	-5.0	-0.2
nitrogen source	Urea (N)	+0.0	-0.2	-0.1	-5.2	-0.0
nitrogen source	nitrate (N)	+0.4	-0.3	-0.1	-5.2	+0.1
carbon source	Crotonic (C)	-0.2	-0.5	-0.0	-3.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.6	-0.3	-4.2	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.0	-0.1	+0.1	-3.9	+0.0
carbon source	D-Fructose (C)	-0.2	+0.1	-0.1	-3.7	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2	-1.0	-0.0	-2.3	-0.0
attachment on pdms	attachment on PDMS; 2 hours	+0.0	+0.1	+0.1	-3.5	+0.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.2	-0.1	+0.1	-2.6	+0.5
pH	pH 7	+0.0	-0.1	+0.3	-3.7	+0.3
pH	Valerolactone (C) pH 6.5	+0.1	-0.3	+0.1	-3.0	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.3	-0.4	+0.2	-2.7	-0.2
carbon source	Trisodium citrate 10 mM (C)	+0.5	+0.6	-0.1	-3.5	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	+0.0	-0.1	-2.1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.0	-0.2	-2.3	-0.2
carbon source	2-Methylbutanoic (C)	+0.4	+0.1	-0.1	-2.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.2	-0.1	-2.3	+0.4
temperature	Growth at 30C; with MOPS	+0.5	+0.1	-0.0	-2.2	-0.2
carbon source	D-Glucose (C)	-0.9	-1.1	+0.1	+1.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6	-0.4	+0.2	-1.6	+1.0
nitrogen source	NAG (N); with MOPS	+0.7	+0.9	+0.0	-1.4	-0.3
nitrogen source	nitrogen source nitrite 1mM	-0.1	-1.1	-0.2	+2.0	+0.1
phage	P. putida Sci small MOI 0.1	+0.7	+0.7	-0.1	+1.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.2	+0.2	+3.0	-0.4