Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3355	PP_3356	PP_3357	PP_3358	PP_3359
carbon source	p-Coumaric (C)	-0.4	-5.3	-6.3	-5.4	-0.7
carbon source	p-Coumaric (C)	-0.3	-6.1	-5.2	-4.9	-0.5
carbon source	ferulate (C); with MOPS	-1.1	-4.0	-5.9	-5.0	+1.5
carbon source	p-Coumaric (C)	-0.1	-4.2	-5.2	-3.1	-1.2
carbon source	p-Coumaric (C)	-0.0	-3.6	-4.2	-3.8	-1.4
carbon source	Ferulic Acid (C)	-0.3	-3.3	-3.6	-2.9	-0.1
carbon source	ferulate (C); with MOPS	-0.4	-3.9	-3.8	-4.5	+2.5
carbon source	ferulate (C); with MOPS	-0.1	-4.5	-2.9	-3.4	+1.4
carbon source	Ferulic Acid (C)	-0.1	-4.1	-2.5	-2.5	-0.5
carbon source	p-Coumaric (C)	+0.0	-2.3	-2.8	-2.3	-1.0
carbon source	1,3-Butandiol (C)	-0.5	+0.2	-0.3	-0.4	-2.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	-0.3	+0.0	+0.1	-2.9
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	+0.2	-0.1	-0.2	+0.2	-3.3
pH	D-Glucose (C) pH 7.5	-0.0	+0.1	-0.5	-0.1	-2.2
carbon source	DL-3-Hydroxybutyric (C)	-0.1	-0.0	+0.0	+0.1	-2.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.3	-0.2	+0.4	-0.3	-1.0
carbon source	Lignin Monomers (C)	-0.2	-0.3	-0.9	-0.4	-0.5
pH	D-Glucose (C) pH 6.5	-0.1	+0.0	-0.3	+0.1	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.1	-0.8	+0.2	-1.3
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.4	-0.3	-0.6	-0.8	+0.2
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.2	+0.2	+0.1	+0.3	-2.0
carbon source	carbon source Bisabolene 48.9 mM	-0.3	+0.0	-0.2	+0.5	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.1	-0.5	-0.4	+1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.0	-0.6	-0.1	+1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.2	+0.7	-0.3	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.1	-0.6	-0.2	+2.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.4	+0.3	+0.1	+1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.2	-0.1	+0.5	+1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.2	-0.4	-0.3	+2.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	-0.1	+0.4	+2.9