Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3353	PP_3354	PP_3355	PP_3356	PP_3357
carbon source	p-Coumaric (C)	+0.1	+0.0	-0.4	-5.3	-6.3
carbon source	p-Coumaric (C)	+0.1	-0.1	-0.3	-6.1	-5.2
carbon source	ferulate (C); with MOPS	+0.2	-0.3	-1.1	-4.0	-5.9
carbon source	p-Coumaric (C)	-0.1	-0.1	-0.1	-4.2	-5.2
carbon source	ferulate (C); with MOPS	-0.1	+0.0	-0.1	-4.5	-2.9
carbon source	p-Coumaric (C)	+0.3	-0.1	-0.0	-3.6	-4.2
carbon source	ferulate (C); with MOPS	+1.1	+0.1	-0.4	-3.9	-3.8
carbon source	Ferulic Acid (C)	+0.3	+0.1	-0.3	-3.3	-3.6
carbon source	Ferulic Acid (C)	+0.4	+0.1	-0.1	-4.1	-2.5
carbon source	p-Coumaric (C)	+0.2	+0.0	+0.0	-2.3	-2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.8	-0.2	-0.1	+0.2	-0.2
phage	P. putida Sci small MOI 0.1	-1.9	-0.2	+0.4	-0.2	+0.0
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.4	-0.0	-0.4	-0.3	-0.6
phage	P. putida Sci Big MOI 0.1	-1.6	-0.1	+0.4	-0.0	-0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.1	+0.1	+0.2	-0.0	-1.5
carbon source	Lignin Monomers (C)	+0.1	+0.1	-0.2	-0.3	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.1	-0.2	-1.3	-0.2	+0.4
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.3	-0.2	+0.3	-0.1	-0.7
carbon source	carbon source D-Glucose 55.5 mM	+0.4	+0.1	-0.4	-0.1	-0.9
phage	P. putida Sci small MOI 0.1	-0.4	+0.1	-0.2	-0.4	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.5	-0.6	-0.2	-0.2	+0.3
nitrogen source	nitrate (N)	+0.5	+0.3	+0.1	-0.0	-0.8
pH	Growth at pH6 and (C) D-Glucose	+1.2	-0.2	-0.9	-0.4	+0.5
temperature	Growth at 25C; with MOPS	+0.9	-0.1	-0.1	-0.1	-0.4
pH	Growth at pH8 and (C) D-Glucose	+0.8	-0.3	+0.1	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.4	+0.4	-0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	+1.0	+0.2	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	+0.4	-0.2	+0.1	-0.7
nitrogen source	D-2-Aminobutyric (N)	+0.9	-0.3	+0.6	-0.0	-0.1
nitrogen source	Ammonium chloride and TNT (N)	+0.6	+0.3	+0.2	+0.1	+0.4