Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3348	PP_3349	PP_3350	PP_3352	PP_3353
phage	P. putida Sci Big MOI 0.1	-0.9	-0.3	-0.1	-0.8	-1.6
phage	P. putida Sci small MOI 0.1	-0.3	-0.9	-0.0	-0.2	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	+0.0	+0.3	-0.2	-1.8
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.3	-0.3	-0.1	-0.6	-0.2
nitrogen source	2,6-diaminopimelic (N)	-0.8	-0.6	-0.1	-0.6	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5	-0.5	-0.6	+0.2	-0.2
stress	R2A with Fusaric 120 ug/mL	-0.5	-0.5	+0.2	-0.1	-0.5
phage	P. putida PUT 7 MOI 1	-0.6	-0.6	-0.9	+0.1	+0.6
pH	Valerolactone (C) pH 6.5	+0.1	-0.1	-0.5	-0.0	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.1	-0.6	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.3	-0.7	+0.5	-0.2
phage	P. putida Sci small MOI 0.1	+0.1	-0.7	+0.3	-0.4	-0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.6	-0.2	+0.4	-0.2	-0.3
temperature shift	Temperature shift 30_to_34; with MOPS	-1.1	-0.3	+0.2	+0.1	+0.2
carbon source	Tween 20 (C)	-0.1	+0.2	-0.4	+0.4	-0.6
phage	P. put South MOI 10	+0.0	-1.0	+0.2	-0.2	+0.5
stress	Growth with Chloride 500 mM; with MOPS	-0.2	-0.5	+0.1	-0.1	+0.7
pH	pH 7	-0.5	-0.1	+0.3	-0.3	+0.6
temperature shift	Temperature shift 30_to_21; with MOPS	+0.2	-0.6	-0.2	+0.1	+0.7
pH	Growth at pH6 and (C) D-Glucose	-0.4	-0.4	-0.0	+0.1	+1.2
temperature	Growth at 25C; with MOPS	+0.3	-0.4	-0.0	-0.0	+0.9
temperature	Growth at 30C; with MOPS	+0.2	-0.4	+0.4	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	+0.5	+0.2	-0.4
nitrogen source	Urea (N)	+0.4	+0.3	+0.1	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.3	-0.0	+0.3	-0.2
nitrogen source	nitrogen source nitrite 0.5mM	+0.4	+0.5	+0.2	-0.0	+0.5
carbon source	ferulate (C); with MOPS	-0.4	-0.1	+0.7	+0.3	+1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.0	-0.1	+0.0	+1.5
carbon source	ferulate (C); with MOPS	-0.2	+0.1	+1.0	+0.5	+0.2
nitrogen source	Ammonium chloride and TNT (N)	+0.2	+0.4	+0.5	+0.2	+0.6