Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3345	PP_3346	PP_3348	PP_3349	PP_3350
phage	P. putida Sci small MOI 0.1	N.D.	-5.3	+0.1	-0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	-3.3	-0.1	+0.0	-0.1
pH	Growth at pH6 and (C) D-Glucose	N.D.	-2.0	-0.4	-0.4	-0.0
phage	P. putida Sci small MOI 0.1	N.D.	-1.3	-0.3	-0.9	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-1.9	-0.1	-0.4	-0.1
phage	P. putida Sci Big MOI 0.1	N.D.	-1.1	-0.9	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.9	-0.5	-0.3	-0.7
temperature shift	Temperature shift 30_to_25; with MOPS	N.D.	-1.4	-0.1	-0.4	-0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	N.D.	-1.7	-0.3	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.6	-0.2	-0.0	-0.3
phage	P. putida PUT 7 MOI 1	N.D.	-0.0	-0.6	-0.6	-0.9
carbon source	1,3-Butandiol (C)	N.D.	-1.1	-0.3	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-2.1	-0.1	+0.2	-0.1
carbon source	BC Lignin Sorghum 10 vol% (C)	N.D.	-1.0	-0.2	-0.1	-0.6
phage	P. put South MOI 10	N.D.	-1.1	+0.0	-1.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	-1.2	+0.2	-0.4	-0.5
pH	Valerolactone (C) pH 6.5	N.D.	-1.4	+0.1	-0.1	-0.5
r2a control with 0.2% methanol	R2A control with 0.2% methanol	N.D.	-1.8	-0.1	+0.1	-0.0
temperature shift	Temperature shift 30_to_34; with MOPS	N.D.	-0.6	-1.1	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.3	+0.1	-0.3	-0.2
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	N.D.	-1.0	-0.5	+0.2	-0.3
carbon source	ferulate (C); with MOPS	N.D.	-2.3	-0.2	+0.1	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	N.D.	-1.1	+0.3	-0.5	+0.1
carbon source	3-methyl-1-butanol 0.25 vol% (C)	N.D.	-1.1	+0.1	+0.4	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	N.D.	+0.8	-0.5	-0.5	-0.6
nitrogen source	NAG (N); with MOPS	N.D.	-0.7	+0.7	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.3	+1.0	+0.3	-0.0
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	N.D.	+1.1	-0.4	+0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+2.1	+0.3	-0.3	+0.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	+2.0	-0.0	+0.0	+0.0