Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3324	PP_3325	PP_3326	PP_3328	PP_5599
pH	pH 7	-0.4	-0.3	+0.3	-3.0	-0.2
pH	pH 6	-0.8	-0.4	+0.1	-2.1	+0.0
carbon source	butyrate (C)	-0.7	-0.1	-0.2	-1.9	+0.1
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.9	-0.5	+0.0	-0.9	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.2	-0.7	-1.1	+0.0
carbon source	D-Glucose (C); with MOPS	+0.3	-0.4	-1.1	-0.7	-0.1
pH	pH 5	-0.3	-0.2	-0.1	-1.3	-0.0
carbon source	ferulate (C); with MOPS	+0.0	-0.3	-0.8	-1.0	+0.1
stress	Growth with Chloride 500 mM	-0.4	-0.0	+0.1	-1.2	-0.2
carbon source	carbon source Bisabolol 45 mM	-0.6	-0.5	+0.1	-0.9	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.7	+0.0	-0.7	-0.5	+0.0
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.6	-0.2	+0.1	-1.1	-0.0
nitrogen source	Urea (N)	+0.1	+0.0	+0.2	-2.1	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.5	-0.0	+0.4	-1.2	-0.0
carbon source	Valeric (C)	-0.2	-0.1	+0.3	-1.2	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.1	+0.1	+0.4	-1.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.6	+0.1	-0.6	+0.5	-0.1
phage	P. putida Sci small MOI 0.1	-0.5	-0.3	+0.4	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.0	+0.4	-1.4	+0.2
nitrogen source	D-2-Aminobutyric (N)	+0.3	-0.3	+0.0	-1.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4	+0.2	-0.6	+0.9	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.2	+0.6	+0.5	+0.5
nitrogen source	nitrogen source nitrite 1mM	-0.1	-0.1	-0.3	+1.7	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	+0.3	-0.3	+1.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.1	-0.1	+1.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.3	+0.1	+0.9	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	-0.1	-0.5	+1.9	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	+0.2	-0.2	+1.9	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.2	+0.2	+1.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.1	+0.7	+1.1	+0.3