Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3316	PP_3317	PP_3318	PP_3319	PP_3320
phage	P. putida Missley MOI 0.1	+0.3	N.D.	-4.4	-0.2	-0.1
nitrogen source	NAG (N); with MOPS	-0.4	N.D.	-2.7	+0.0	-0.3
temperature shift	Temperature shift 30_to_10; with MOPS	-0.1	N.D.	-2.5	+0.1	-0.8
nitrogen source	D-2-Aminobutyric (N)	+0.0	N.D.	-1.1	-0.1	-1.8
phage	P. putida Sci Big MOI 0.1	-0.5	N.D.	-1.8	-0.0	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.0	N.D.	-2.3	-0.1	-0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.1	N.D.	-1.2	-0.1	-1.0
phage	P. putida PUT10 MOI 10	+0.1	N.D.	-1.0	-0.3	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	N.D.	-1.2	+0.1	-1.0
stress	Growth with Chloride 200 mM; with MOPS	-0.0	N.D.	-2.5	+0.3	+0.2
stress	Growth with Chloride 500 mM; with MOPS	+0.0	N.D.	-2.0	+0.1	-0.2
carbon source	L-Leucine (C)	-0.0	N.D.	-1.2	+0.1	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	N.D.	-1.1	+0.1	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3	N.D.	-1.5	-0.2	+0.1
pH	pH 9	+0.3	N.D.	-1.8	-0.2	-0.0
temperature	Growth at 25C	-0.1	N.D.	-1.9	-0.3	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	-0.7	+0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	N.D.	-1.6	+0.1	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.2	N.D.	-1.5	+0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	N.D.	-1.3	+0.2	+1.2
pH	Growth at pH8 and (C) D-Glucose	-0.0	N.D.	+0.9	+0.3	-1.0
carbon source	Valerolactone (C)	-0.2	N.D.	-1.1	+0.0	+1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	N.D.	-1.3	+0.2	+0.8
phage	PUT 8 MOI 1	+0.1	N.D.	+1.6	+0.1	-1.6
pH	Growth at pH7 and (C) D-Glucose	-0.2	N.D.	+1.7	+0.2	-0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.2	N.D.	+0.7	-0.1	+1.1
nitrogen source	2,6-diaminopimelic (N)	-0.4	N.D.	+1.7	+0.0	+0.5
pH	pH 8	+0.1	N.D.	+1.0	-0.1	+1.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.1	N.D.	+1.6	+0.2	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3	N.D.	+1.3	+0.1	+0.6