Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3302 and PP_3303 are separated by 51 nucleotidesPP_3303 and PP_3304 overlap by 4 nucleotidesPP_3304 and PP_3305 are separated by 152 nucleotidesPP_3305 and PP_3306 are separated by 412 nucleotides PP_3302: PP_3302 - RND efflux transporter, at 3,735,104 to 3,738,196 _3302 PP_3303: PP_3303 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 3,738,248 to 3,739,561 _3303 PP_3304: PP_3304 - Multidrug resistance transporter, Bcr/CflA family, at 3,739,558 to 3,740,796 _3304 PP_3305: PP_3305 - Membrane protein, TerC family, at 3,740,949 to 3,741,932 _3305 PP_3306: PP_3306 - conserved protein of unknown function, at 3,742,345 to 3,742,551 _3306
Group Condition PP_3302 PP_3303 PP_3304 PP_3305 PP_3306
carbon source 5-Aminovaleric 10 mM (C) +0.1 -0.5 +0.0 -0.5 N.D.
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.4 -0.4 -0.2 +0.2 N.D.
phage P. putida Sci Big MOI 0.1 +0.2 +0.2 -0.4 -0.3 N.D.
r2a control R2A control -0.2 -0.6 +0.4 +0.1 N.D.
temperature Growth at 30C +0.1 -0.8 +0.3 +0.1 N.D.
stress Growth with Chloride 200 mM +0.4 -0.3 +0.1 -0.5 N.D.
pH pH 4 -0.2 -0.5 +0.2 +0.4 N.D.
carbon source carbon source D-Glucose 55.5 mM -0.1 -0.2 -0.4 +0.6 N.D.
carbon source ferulate (C); with MOPS -0.0 -0.6 +0.3 +0.5 N.D.
temperature Growth at 25C; with MOPS +0.2 -0.5 +0.3 +0.3 N.D.
carbon source Myristic (C) -0.5 +0.1 +0.1 +0.5 N.D.
nitrogen source Propiolactam (N) +0.2 +0.7 -0.4 +0.0 N.D.
pH pH 7 -0.3 -0.1 +0.4 +0.4 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM -0.1 -0.1 -0.1 +0.8 N.D.
pH Growth at pH7 and (C) D-Glucose -0.1 +0.4 +0.6 -0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 +0.7 +0.2 -0.2 N.D.
stress Growth with Chloride 200 mM; with MOPS +0.2 -0.3 +0.3 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.6 +0.8 +0.4 N.D.
carbon source D-Glucose (C); with MOPS +0.2 +0.1 +0.6 -0.2 N.D.
nitrogen source D-2-Aminobutyric (N) +0.3 +0.5 +0.3 -0.4 N.D.
nitrogen source D-2-Aminobutyric (N) +0.4 +0.3 -0.2 +0.3 N.D.
carbon source ferulate (C); with MOPS +0.2 +0.1 +0.8 -0.2 N.D.
pH pH 9 -0.2 +0.1 +0.5 +0.6 N.D.
phage P. putida South MOI 10 +0.0 +0.8 +0.3 -0.1 N.D.
pH Growth at pH6 and (C) D-Glucose +0.3 +0.7 +0.2 -0.0 N.D.
temperature shift Temperature shift 30_to_25 +0.1 +0.3 +0.4 +0.3 N.D.
temperature shift Temperature shift 10_to_30 +0.2 +0.2 +0.5 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.7 +0.1 +0.5 N.D.
phage P. putida PUT 7 MOI 1 +0.2 +0.8 +0.2 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +1.0 +0.3 +0.4 N.D.
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