Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3298 and PP_3299 are separated by 170 nucleotidesPP_3299 and PP_3300 are separated by 71 nucleotidesPP_3300 and PP_3301 are separated by 77 nucleotidesPP_3301 and PP_3302 overlap by 4 nucleotides PP_3298: PP_3298 - CinA domain protein, at 3,731,103 to 3,731,606 _3298 PP_3299: PP_3299 - Outer membrane lipoprotein, at 3,731,777 to 3,733,240 _3299 PP_3300: PP_3300 - Transcriptional regulator, tetR family, at 3,733,312 to 3,733,926 _3300 PP_3301: PP_3301 - RND efflux membrane fusion protein, at 3,734,004 to 3,735,107 _3301 PP_3302: PP_3302 - RND efflux transporter, at 3,735,104 to 3,738,196 _3302
Group Condition PP_3298 PP_3299 PP_3300 PP_3301 PP_3302
stress R2A with Fusaric 480 ug/mL -0.1 -0.2 -1.8 -0.1 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.2 -1.8 +0.0 -0.1
stress R2A with Fusaric 480 ug/mL -0.1 -0.2 -1.4 -0.2 -0.1
stress R2A with Fusaric 480 ug/mL -0.2 -0.0 -1.8 +0.0 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -0.0 -0.2 -0.9 -0.1
carbon source Delta-Nonalactone (C) +0.1 +0.1 -2.1 +0.1 -0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.2 -1.6 -0.1 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.1 -1.8 +0.6 -0.1
carbon source carbon source 3-O-methyl-glucose 50 mM -0.2 -0.4 -0.6 -0.3 -0.1
carbon source Delta-Decalactone (C) +0.1 -0.2 -1.6 -0.0 +0.1
carbon source Delta-Undecalactone (C) -0.1 +0.0 -1.4 -0.1 -0.2
pH pH 7 -0.3 -0.3 -0.3 -0.4 -0.3
carbon source Delta-Decalactone (C) +0.1 -0.0 -1.9 +0.1 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 +0.2 -1.5 +0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 +0.2 -1.5 +0.2 -0.1
stress R2A with Fusaric 480 ug/mL +0.2 +0.0 -1.6 -0.2 +0.2
stress R2A with Fusaric 480 ug/mL -0.1 -0.1 -1.3 +0.1 -0.0
stress R2A with Fusaric 480 ug/mL +0.1 +0.1 -1.6 -0.0 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.1 -1.6 +0.2 +0.0
carbon source Valeric (C) -0.2 -0.4 -0.6 -0.1 +0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.0 -1.3 +0.3 -0.1
carbon source ferulate (C); with MOPS -0.6 +0.1 -0.9 +0.4 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 -0.1 -1.2 +0.6 +0.0
pH Growth at pH7 and (C) Trisodium citrate -0.7 +0.2 -0.5 -0.0 +0.1
carbon source ferulate (C); with MOPS +0.1 +0.2 -1.1 +0.6 +0.2
nitrogen source 2,6-diaminopimelic (N) -0.6 +0.5 +0.4 +0.2 -0.0
nitrogen source 2,6-diaminopimelic (N) +0.3 +0.3 +0.2 -0.5 +0.4
phage P. putida Sci Big MOI 0.1 +0.3 -0.1 +0.8 +0.3 +0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.5 +0.1 +0.9 +0.2 +0.2
phage P. putida Sci small MOI 0.1 +0.5 +0.4 +0.6 +0.3 +0.2
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