Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3291	PP_3292	PP_3293	PP_3294	PP_3295
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.0	-0.4	-0.2	-0.8	-1.1
temperature	Growth at 25C	-0.2	-0.0	-0.0	-0.8	-1.2
phage	P. putida Missley MOI 0.1	-0.3	+0.1	-0.7	-0.2	-1.0
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.1	-0.4	-0.3	-0.7	-0.6
phage	P. putida Sci Big MOI 0.1	-0.1	-0.3	-0.9	-0.7	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.3	+0.1	+0.1	-0.0	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.3	-0.6	-1.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.1	-0.1	+0.1	+0.2	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.1	+0.3	-0.1	-1.2
nitrogen source	2,6-diaminopimelic (N)	+0.2	-1.6	-0.7	+0.4	+0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	-0.3	+0.4	-0.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.4	-0.0	-0.4	-1.2
pH	Valerolactone (C) pH 6.5	+0.0	-0.9	+0.1	+0.2	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.1	-0.3	+0.6	-1.0	-0.5
carbon source	Tween 20 (C)	-0.3	-1.0	+0.4	-0.3	+0.2
pH	Growth at pH8 and (C) Trisodium citrate	-0.1	-0.4	-0.1	-0.9	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	+0.1	+0.4	-0.7	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	+0.4	+0.3	+0.0	-1.4
carbon source	D-Glucose (C); with MOPS	-0.4	-0.5	+0.0	-0.3	+0.6
stress	Growth with Chloride 500 mM; with MOPS	-0.2	-0.3	+0.4	-0.7	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.9	-0.1	-0.5	-0.3
carbon source	ferulate (C); with MOPS	-0.1	+0.3	+0.3	-0.9	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	+0.6	-0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.0	-0.1	+1.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.5	+0.8	-0.6
nitrogen source	Propandiamine (N)	-0.0	+0.4	-0.2	-0.3	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	+0.2	+1.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+1.3	+0.1	+0.1	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.2	+0.6	-0.2	+0.7	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.2	+0.1	+0.2	+1.4