Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3287	PP_5598	PP_3288	PP_3289	PP_3290
phage	P. putida PUT 7 MOI 1	-2.4	-0.4	-0.9	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.6	-0.1	-1.1	-0.3
nitrogen source	2,6-diaminopimelic (N)	+0.0	-2.4	-0.6	-0.4	+0.5
phage	P. putida Missley MOI 0.1	-1.3	+0.1	-0.4	+0.4	-1.2
phage	P. putida Sci Big MOI 0.1	-0.8	-1.4	+0.2	-0.0	-0.2
carbon source	1,3-Butandiol (C)	-0.1	-1.5	-0.2	+0.1	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.4	-0.1	-0.1	-0.5	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-1.0	-0.2	-0.2	-0.1
phage	P. putida Sci small MOI 0.1	-1.3	+0.5	-0.1	-0.5	-0.4
phage	P. putida Sci small MOI 0.1	+0.4	+0.1	-0.1	-1.6	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.6	+0.3	-0.8	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.6	+0.1	-1.3	+0.6
pH	Growth at pH6 and (C) D-Glucose	-0.5	-1.1	-0.2	+0.1	+0.1
carbon source	Tween 20 (C)	-0.1	-0.8	-0.4	+0.2	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.6	-0.9	-0.3	+0.5	-0.1
temperature	Growth at 25C	+0.2	-2.2	-0.1	+0.4	+0.4
carbon source	4-Aminobutyric 10 mM (C)	-0.2	-0.8	+0.3	-0.6	+0.2
stress	Growth with Chloride 500 mM	-0.3	-1.1	+0.3	+0.2	-0.2
nitrogen source	nitrate (N)	-0.6	-0.6	-0.0	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.5	+0.2	-0.4	+0.6
carbon source	Valerolactone (C)	+0.0	+0.7	-0.4	-0.5	-0.4
carbon source	Valerolactone (C)	-0.1	+0.8	-0.2	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+0.2	+0.2	-0.4	+0.4
stress	R2A with Fusaric 240 ug/mL	-0.6	+0.8	+0.1	-0.2	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.7	+0.8	+0.3	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.0	-0.5	-0.4	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	-0.9	+0.7	+0.3	+0.6
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.5	+0.8	-0.2	-0.4	+0.2
nitrogen source	nitrate (N)	+0.1	+0.5	-0.5	+0.1	+0.7
pH	pH 9	+0.4	+1.3	-0.0	-0.1	-0.3