Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3285 and PP_3286 are separated by 77 nucleotidesPP_3286 and PP_3287 are separated by 58 nucleotidesPP_3287 and PP_5598 are separated by 2 nucleotidesPP_5598 and PP_3288 are separated by 289 nucleotides PP_3285: PP_3285 - detoxifying thioesterase of the phenylacetate degradation pathway, at 3,719,747 to 3,720,346 _3285 PP_3286: PP_3286 - DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA), at 3,720,424 to 3,721,347 _3286 PP_3287: PP_3287 - transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family, at 3,721,406 to 3,722,203 _3287 PP_5598: PP_5598 - conserved protein of unknown function, at 3,722,206 to 3,722,454 _5598 PP_3288: PP_3288 - Universal stress protein family, at 3,722,744 to 3,723,670 _3288
Group Condition PP_3285 PP_3286 PP_3287 PP_5598 PP_3288
carbon source Phenylacetic (C) -7.4 +0.3 -0.3 -0.5 -0.1
carbon source Levulinic Acid (C) +0.1 -5.3 -0.0 -0.3 +0.0
carbon source 4-Hydroxyvalerate (C) (40mM) -0.7 -4.2 -0.2 -0.2 -0.1
carbon source Levulinic Acid (C) +0.1 -5.2 -0.2 -0.0 -0.0
carbon source Levulinic Acid (C) +0.2 -4.7 -0.1 -0.3 -0.1
carbon source 4-Hydroxyvalerate (C) (40mM) -0.4 -4.4 +0.0 -0.2 +0.1
carbon source Levulinic Acid (C) -0.0 -3.8 -0.2 -0.5 -0.1
carbon source Phenylacetic (C) -4.6 +0.5 +0.1 -0.4 -0.1
phage P. putida PUT 7 MOI 1 -0.8 +0.2 -2.4 -0.4 -0.9
nitrogen source 2,6-diaminopimelic (N) -0.9 -0.1 +0.0 -2.4 -0.6
carbon source Hexanoic (C) -0.1 -3.2 -0.2 -0.1 -0.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.2 -4.0 +0.1 +0.2 +0.1
carbon source ferulate (C); with MOPS +0.8 -2.4 -0.6 -0.6 -0.3
carbon source 1,3-Butandiol (C) +0.4 -1.6 -0.1 -1.5 -0.2
carbon source Hexanoic (C) +0.1 -2.7 -0.0 -0.1 -0.1
carbon source 3-methyl-1-butanol (C) +0.2 -3.0 +0.1 -0.1 +0.0
carbon source ferulate (C); with MOPS +0.6 -2.1 -0.4 -0.6 -0.1
nitrogen source D-2-Aminobutyric (N) -1.5 -1.1 -0.0 -0.4 +0.6
nitrogen source D-2-Aminobutyric (N) -0.7 -1.3 +0.1 -0.8 +0.3
carbon source ferulate (C); with MOPS -0.2 -2.3 -0.3 +0.3 +0.1
carbon source Tween 20 (C) +0.5 -1.4 -0.1 -0.8 -0.4
phage P. putida Sci Big MOI 0.1 -0.7 +0.7 -0.8 -1.4 +0.2
temperature shift Temperature shift 30_to_21; with MOPS +0.5 -1.2 -0.1 -1.1 +0.2
carbon source L-Leucine (C) +0.3 +1.8 -0.4 +0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.2 +0.1 +0.0 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.1 -0.2 -0.6 +0.4
carbon source 4-Methyl-2-oxopentanoic (C) +0.3 +5.3 -0.1 -0.3 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.2 +4.8 +0.1 -0.0 +0.1
carbon source 4-Methyl-2-oxopentanoic (C) -0.0 +5.2 +0.1 +0.1 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.1 +5.5 -0.5 +0.3 +0.1
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